| Project | Title | Organism | Organs/Tissues | Technology | Experiment Name | Experiment Type | Nb Samples |
|---|---|---|---|---|---|---|---|
| 12PLEX_MED_2013_04 | Influence of Nod Factors on early developmental stages of root development in Medicago truncatula #PubMed:28073951 | Medicago truncatula | roots | Arrays | 12PLEX_MED_2013_04 | treated vs untreated comparison | 12 |
| 12plex_medicago-2012-0... | 12plex-medicago-2012-06_GENOPEA3.2 #PubMed:31440268 | Medicago truncatula | caulin leaf, flower bud | Arrays | Vegetative and reproductive leaves | time course,treated vs untreated comparison | 30 |
| 12plex_medicago_2014_0... | analysis of symbiotic root nodule development | Medicago sativa | nodule, roots | Arrays | NAR nodule vs root transcriptome | organ comparison | 8 |
| 12PLEX_PEA_2013_02 | Water stress and seed filling in pea | Pisum sativum | seed | Arrays | 12PLEX_PEA_2013_02_G | treated vs untreated comparison | 12 |
| 12PLEX_PEA_2013_02 | Water stress and seed filling in pea | Pisum sativum | caulin leaf | Arrays | 12PLEX_PEA_2013_02_F | treated vs untreated comparison | 12 |
| 12plex_poplar_2012-01 | Characterization of early molecular events of woody stem gravitropism independently of phototropic responses | Populus tremula x Populus alba | stem | Arrays | Gravitropic stimulation / Isotropic light | treated vs untreated comparison | 16 |
| 12plex_vitis_2011-02 | Défistim | Vitis vinifera | caulin leaf | Arrays | 12PLEX_VITIS_2011_02_48h | normal vs disease comparison | 21 |
| 12plex_vitis_2011-02 | Défistim | Vitis vinifera | caulin leaf | Arrays | 12PLEX_VITIS_2011_02_24h | normal vs disease comparison,treated vs untreated comparison | 21 |
| 12PLEX_WHEAT_2012-05 | The wheat grain transcriptome response to high temperature #PubMed:29940014 | Triticum aestivum | seed | Arrays | 12PLEX-WHEAT_2012-05 | genotype comparaison,treated vs untreated comparison | 96 |
| 4plex_Brassica_2015_04 | Impact of atmospheric benzene on leaves of Brassica oleracea. | Brassica oleracea | aerial | Arrays | Impact of different doses of benzene on leaves of Brassica oleracea | treated vs untreated comparison | 16 |
| 4plex_MAIZE_2015_02 | FUI GranoFlakes. #PubMed:28450877 | Zea mays | seed | Arrays | Albumen Vitreux vs Albumen Farineux | tissue comparison | 16 |
| 4plex_MAIZE_2015_02 | FUI GranoFlakes. | Zea mays | seed | Arrays | CINETIQUE comparison | time course | 16 |
| 4PLEX_PEA_2014_01 | Characterization of transcriptome changes in leaves of wild-type and mutant lines (for a sulfur transporter) subjected or not to sulfur deficiency during the reproductive phase | Pisum sativum | caulin leaf | Arrays | Transcriptome changes in pea leaves with sulfur deficency/sufficienty during reproductive phase. | gene knock out,genotype comparaison,treated vs untreated comparison | 32 |
| 4plex_Physco_2014-05 | Strigopath/Physcomitrella patens | Physcomitrella patens | whole plant | Arrays | Ppmax2 response to GR24 | genotype comparaison,normal vs transgenic comparaison,treated vs untreated comparison | 6 |
| 4PLEX_TOMATO_2013_03 | Effect of drought stress on the transcriptome of tomato leaves. #PubMed:26582510 | Solanum lycopersicum | caulin leaf | Arrays | 4PLEX_TOMATO_2013_03 | genotype comparaison | 8 |
| ADT03-02_Leaf_Flower-B... | Genes expressed in flowers and leaves #PubMed:15269332 | Arabidopsis thaliana | flower, rosette | Arrays | Leaf_Flower-bud | organ comparison | 2 |
ADT04-03_FDH_Drought  | Analysis of FDH (Formate dehydrogenase) insertion mutants in response to drought stress. | Arabidopsis thaliana | rosette | Arrays | Drought stress | gene knock out,treated vs untreated comparison | 14 |
| ADT05-01_Hormon_cells | Effect of the Auxin/Cytokinin ratio on the transcriptome of stem cells | Arabidopsis thaliana | cell culture/primary cell | Arrays | Cyt_Aux_Balance | dose response | 21 |
| ADT05-04_DRN | Embryonic patterning in Arabidopsis thaliana | Arabidopsis thaliana | seed | Arrays | mutant vs wildtype | gene knock out | 4 |
| ADT05-04_DRN | Embryonic patterning in Arabidopsis thaliana | Arabidopsis thaliana | protoplast | Arrays | DRN/DRN-L expressing cells vs non-epressing cells | genotype comparaison | 12 |
| ADT06-01_ESR1-DRN_dexa... | Transcriptomic study of the transcription factor ESR1/DRN. #PubMed:23011125 | Arabidopsis thaliana | whole plant | Arrays | ESR1-DRN | normal vs transgenic comparaison | 12 |
| ADT06-02_Pollen | Comparison between Columbia and WS pollen RNAs. | Arabidopsis thaliana | pollen | Arrays | Pollen | ecotype comparison | 2 |
| ADT06-03_MKK2-cold | Transcriptomic analysis of mkk2 upon Cold stress #PubMed:19529823 | Arabidopsis thaliana | whole plant | Arrays | Mutants | gene knock out | 14 |
| ADT06-03_MKK2-cold | Transcriptomic analysis of mkk2 upon Cold stress | Arabidopsis thaliana | aerial | Arrays | MKK2_mkk2_and_WRKY19_cold_time_course | time course,wt vs mutant comparison | 28 |
| ADT06-04_miRNA_Nitroge... | To discover miRNA implied following a Nitrogen starvation and after re-supply. | Arabidopsis thaliana | roots, rosette | Arrays | miRNA_Nitrogen | time course | 8 |
| ADT07-01_miRNA-N | miRNA and Nitrogen starvation and resupply | Arabidopsis thaliana | roots, rosette | Arrays | Nitrogen starvation | time course | 16 |
| ADT07-02_C-N_Cells | C/N balance in cells | Arabidopsis thaliana | cell culture/primary cell | Arrays | Cells | dose response | 18 |
| ADT07-03_miR398-mutant... | Analysis of miR398 mutants. #PubMed:20128885 | Arabidopsis thaliana | rosette | Arrays | miR398 mutant analysis | gene knock out | 8 |
| ADT08-01_upp | Trancriptome analysis of the Arabidopsis upp-1/2 mutants | Arabidopsis thaliana | whole plant | Arrays | ADT08-01_upp | wt vs mutant comparison | 16 |
| ADT09-01_Thellungiella | osmotic stress tolerance in Thellungiella halophyla | Arabidopsis thaliana, Thellungiella | pistil,stamen, rosette | Arrays | Thelungiella | genotype comparaison | 4 |
| ADT09-02_fireman | Impact of the fireman mutation in the Erwinia amylovora response of Arabidopsis | Arabidopsis thaliana | aerial | Arrays | Fireman vs WT Erwinia infection | normal vs disease comparison,normal vs transgenic comparaison | 8 |
| ADT10-01_WIP2 | Transcriptome analysis of WIP overexpressing plants | Arabidopsis thaliana | seedling | Arrays | WIP overexpressing plants | gene knock in (transgenic),normal vs transgenic comparaison | 9 |
| ADT10-02_35sUPRT | Transcriptomic analysis of overexpression URPT gene. #PubMed:19563437 | Arabidopsis thaliana | whole plant | Arrays | UPRT overexpression | normal vs transgenic comparaison | 10 |
| ADT12-01_UPRT | Plant RABT n°1 | Arabidopsis thaliana | whole plant | Arrays | Plant RABT n°1 | treated vs untreated comparison | 8 |
| AF01_Cul3_a | Molecular and functional characterisation of Arabidopsis Cullin 3A #PubMed:15659098 | Arabidopsis thaliana | whole plant | Arrays | Comparison | normal vs disease comparison | 6 |
| AF01_Cul3a2_Cul3b | Study of the function of SCF complexes in Arabidopsis. | Arabidopsis thaliana | seedling | Arrays | comparison WS vs CRB (Cul3a) | wt vs mutant comparison | 6 |
| AF01_Cul3a2_Cul3b | Study of the function of SCF complexes in Arabidopsis. | Arabidopsis thaliana | seedling | Arrays | comparison Col0 vs 003D | wt vs mutant comparison | 6 |
| AF09_HCA | Molecular characterization of a mutant altered in the vascular system organization (hca: high cambial activity). #PubMed:16212606 | Arabidopsis thaliana | seedling | Arrays | comparison mutant HCA vs WS | wt vs mutant comparison | 6 |
| AF09_lignin | Lignin mutants and UV stress #PubMed:19149885 | Arabidopsis thaliana | stem | Arrays | CCR | normal vs disease comparison | 4 |
| AF09_lignin | Lignin mutants and UV stress | Arabidopsis thaliana | whole plant | Arrays | DML6 | normal vs disease comparison,treated vs untreated comparison | 8 |
| AF09_lignin | Lignin mutants and UV stress | Arabidopsis thaliana | whole plant | Arrays | EBL87 | normal vs disease comparison,treated vs untreated comparison | 4 |
| AF09_lignin | Lignin mutants and UV stress | Arabidopsis thaliana | stem | Arrays | stem developement | time course | 3 |
| AF09_lignin | Lignin mutants and UV stress | Arabidopsis thaliana | stem | Arrays | CD | normal vs disease comparison | 6 |
| AF09_lignin | Lignin mutants and UV stress | Arabidopsis thaliana | stem | Arrays | BX | normal vs disease comparison | 4 |
| AF13_PLP2 | Functionnal analysis of lipid acyl hydrolases in Arabidopsis antimicrobial defense | Arabidopsis thaliana | rosette | Arrays | PLP2 Bc 1 | normal vs rnai mutant comparaison,time course,treated vs untreated comparison | 9 |
| AF13_PLP2 | Functionnal analysis of lipid acyl hydrolases in Arabidopsis antimicrobial defense | Arabidopsis thaliana | rosette | Arrays | PLP2 Botrytis cinerea 2 | gene knock in (transgenic),normal vs rnai mutant comparaison,time course | 5 |
| AF13_PLP2 | Functionnal analysis of lipid acyl hydrolases in Arabidopsis antimicrobial defense | Arabidopsis thaliana | rosette | Arrays | PLP2 Paraquat | gene knock in (transgenic),time course | 7 |
| AF24_CytP450_Cyp98A3 | comparison mutant cytP450 vs control WS #PubMed:16377748 | Arabidopsis thaliana | whole plant | Arrays | polyphenol | wt vs mutant comparison | 2 |
| AF30_Starch_circadian_... | The impact of some genes mutations implicated in the amidon metabolism | Arabidopsis thaliana | rosette | Arrays | Double mutant SBE | gene knock out | 12 |
| AF30_Starch_circadian_... | The impact of some genes mutations implicated in the amidon metabolism | Arabidopsis thaliana | rosette | Arrays | Circadian cycle | time course | 10 |
| AF31_HAF2_GCN5 | histone acetylation required for gene expression during germination | Arabidopsis thaliana | seedling | Arrays | Comparison WS vs HAF2_GCN5 | wt vs mutant comparison | 9 |
| AF31_mgoun3 | Leaves transcriptome analysis of mgo3 mutant in Arabidopsis thaliana #PubMed:16728410 | Arabidopsis thaliana | seedling | Arrays | Comparison WS vs DRN | wt vs mutant comparison | 6 |
| AF31_TAFhaf2 | Gene expression affected by the mutation of Arabidopsis thaliana HAF2 gene encoding TATA-binding protein (TBP)-associated factor TAF1 #PubMed:15525647 | Arabidopsis thaliana | rosette | Arrays | comparison TAF WS | wt vs mutant comparison | 6 |
| AF32_Root-Knot_Nematod... | Response to nematode infection #PubMed:16236154 | Arabidopsis thaliana | roots | Arrays | Nematode-1 | normal vs disease comparison | 12 |
| AF47_Thioredoxins | Impact of a plastidial redox perturbation on Arabidopsis transcriptome | Arabidopsis thaliana | rosette | Arrays | Comparison Ws vs DE and DY | wt vs mutant comparison | 6 |
| AF51_ATM | A functional study of genes that might play a role in DNA repair/recombination and in the response to oxidative stress (Microarrays expression studies, Microbiological assays, In planta functional studies) #PubMed:17487278 | Arabidopsis thaliana | whole plant | Arrays | ATM time course | time course | 16 |
| AF51_ATM | A functional study of genes that might play a role in DNA repair/recombination and in the response to oxidative stress (Microarrays expression studies, Microbiological assays, In planta functional studies) | Arabidopsis thaliana | seedling | Arrays | SADE-CATMA | treated vs untreated comparison | 4 |
| AF51_ATM | A functional study of genes that might play a role in DNA repair/recombination and in the response to oxidative stress (Microarrays expression studies, Microbiological assays, In planta functional studies) | Arabidopsis thaliana | roots | Arrays | ATM-ROOT | treated vs untreated comparison | 8 |
| AF73_OST2 | Open stomata 2 mutant | Arabidopsis thaliana | aerial | Arrays | OPEN STOMATA2 | wt vs mutant comparison | 12 |
| AFFY_Aba_Ath1 | Characterization of aba3-1 suppressor mutants | Arabidopsis thaliana | aerial | Arrays | AFFY_Aba_Ath1 | wt vs mutant comparison | 12 |
| AFFY_AGRO-BI_Medicago | AGRO-BI-Toulouse | Medicago truncatula | roots | Arrays | AFFY-AGRO-BI-Medicago | growth in nitrogen-sufficient (s) vs. nitrogen-limited (l) conditions | 18 |
| AFFY_AMs_MAIZE | Cell wall maize mutant during arbuscular mycorrhizal symbiosis | Zea mays | roots | Arrays | AFFY_AMs_MAIZE | treated vs untreated comparison | 8 |
| AFFY_Aphanomyces_Medic... | Comparison of plant responses upon Aphanomyces euteiches infection in wild type (A17) line and in the nfp-2 mutant #PubMed:27994614, 23432463 | Medicago truncatula | roots | Arrays | AFFY_Aphanomyces_Medicago | near isogenic lines (hif),normal vs ems mutant comparison | 12 |
| AFFY_ATH_2012_04 | Fonctional caracherization of JMJ24, a putative histone demethylase | Arabidopsis thaliana | aerial | Arrays | AFFY_ATH_2012_04 | gene knock out | 8 |
| AFFY_ATH_2012_05 | Arabidopsis Ubiquitin-Like Proteases characterization #PubMed:27325215 | Arabidopsis thaliana | seedling | Arrays | AFFY_ATH_2012_05 | gene knock out | 12 |
| AFFY_BRACHY_2011_11 | Transcriptomics analysis of DON and Fusarium graminearum response in Brachypodium distachyon #PubMed:25063396 | Brachypodium distachyon | silique and seed | Arrays | AFFY_BRACHY_2011_11 | normal vs disease comparison,time course | 9 |
| AFFY_Bt2_maize | Phenotypic and molecular characterisation of a novel Bt2 allele in maize #PubMed:18287491 | Zea mays | seed | Arrays | AFFY_Bt2_maize | gene knock out | 4 |
| AFFY_CCR_Maize | Downregulation of cinnamoyl-coenzyme A reductase in maize #PubMed:21493812 | Zea mays | aerial | Arrays | AFFY_CCR_Maize | gene knock in (transgenic) | 4 |
| AFFY_Cellwall_Maize | Understanding the Diversity of Maize Cell Wall | Zea mays | stem | Arrays | AFFY_Cellwall_Maize | organ comparison | 10 |
| AFFY_cinetique_Lyon_Ro... | Flower/Petal initiation and development in roses #PubMed:22194838 | Rosa chinensis | flower | Arrays | AFFY_cinetique_Lyon_Rose | time course | 12 |
| AFFY_COTTON_2011_12 | Comparative transcriptional profiling of cotton fibers in Gossypium hirsutum and Gossypium barbadense using EST pyrosequencing and microarray hybridization #PubMed:23166598 | Gossypium hirsutum | seed | Arrays | AFFY_COTTON_2011_12 | x comparison between two genotypes in cell type | 4 |
| AFFY_Diversity_Maize | Understanding the Diversity of Maize Cell Wall | Zea mays | stem | Arrays | AFFY_Diversity_Maize | organ comparison | 4 |
| AFFY_duplicature_Lyon_... | Double flower phenomenon: Control of petal number in roses #PubMed:22194838 | Rosa gallica, Rosa hybrida | flower | Arrays | AFFY_duplicature_Lyon_Rose | genotype comparaison | 8 |
| AFFY_EN-TJ_Maize | Understanding the Diversity of Maize Cell Wall | Zea mays | aerial | Arrays | AFFY_TJ_Maize | genotype comparaison | 4 |
| AFFY_EN-TJ_Maize | Understanding the Diversity of Maize Cell Wall | Zea mays | aerial | Arrays | AFFY_EN_Maize | genotype comparaison | 4 |
| AFFY_floralAngers_Rose | Study of floral initiation and recurrent blooming in rose #PubMed:22194838 | Rosa lucieae, Rosa hybrida | shoot apex | Arrays | AFFY_floral_Rose | time course | 26 |
| AFFY_H2O2_Medicago | Identification of putative H2O2 regulated genes during the establishment of the Sinorhizobium meliloti Medicago truncatula symbiotic interaction. #PubMed:23347006 | Medicago truncatula | roots | Arrays | AFFY_H2O2_Medicago | treated vs untreated comparison | 8 |
| AFFY_herbicide_vulpin | Metabolism-based resistance to herbicides in black-grass | Alopecurus myosuroides | tiller | Arrays | AFFY_herbicide_vulpin | treated vs untreated comparison | 6 |
| AFFY_hypocTemp_Medicag... | Identification of molecular factors explaining decreased hypocotyl growth at low temperature in Medicago truncatula. | Medicago truncatula | hypocotyl | Arrays | AFFY_hypocTemp_Medicago | time course | 24 |
| AFFY_L2BCTV_Ath | Expression viral protein L2 BCTV in Arabidopsis thaliana #PubMed:22404507 | Arabidopsis thaliana | aerial | Arrays | AFFY_L2BCTV_Ath | gene knock in (transgenic) | 9 |
| AFFY_MED_2010_12 | Comparison of plant responses upon Aphanomyces euteiches infection in wild type (A17) line and in the Mtnf-ya1-1 mutant | Medicago truncatula | roots | Arrays | AFFY_infection_Medicago | normal vs disease comparison,normal vs ems mutant comparison,time course | 12 |
| AFFY_MED_2011_04 | Molecular mechanisms of partial resistance to Aphanomyces euteiches in Medicago truncatula. #PubMed:25765337 | Medicago truncatula | roots | Arrays | AFFY_MolecularMechanism_Medicago | resistance vs susceptibility comparison,time course,treated vs untreated comparison | 18 |
| AFFY_MED_2011_06 | Analysis of the Medicago noot mutant | Medicago truncatula | roots | Arrays | AFFY_MED_2011_06 | gene knock out,organ comparison | 10 |
| AFFY_MED_2011_09 | Analysis of Medicago truncatula root transcriptome in response to mycorrhization by Glomus intraradices under phosphate and nitrogen limitation #PubMed:23506613 | Medicago truncatula | roots | Arrays | AFFY_MED_2011_09 | wt vs mutant comparison | 12 |
| AFFY_MED_2011_10 | Comparison of plant responses upon Aphanomyces euteiches infection in wild type (A17) line and in the lyr3-1 and lyr3-2 mutants | Medicago truncatula | roots | Arrays | AFFY_MED_2011_10 | near isogenic lines (hif),normal vs mutant comparison | 18 |
| AFFY_MED_2011_14 | Transcriptomic analysis of roots of WT (A17) Medicago truncatula plants and of a hypermycorrhizal mutant (B9) grown on limiting (P/10) or non-limiting phosphate (P2). #PubMed:24815324 | Medicago truncatula | roots | Arrays | AFFY_MED_2011_14 | dose response,gene knock out | 12 |
| AFFY_MED_2012_03 | Characterization of new phytostimulatrices molecules for the improvement of plants products and crop resistance to diseases | Medicago truncatula | roots | Arrays | AFFY_MED_2012_03 | normal vs ems mutant comparison | 27 |
| AFFY_MED_2013_05 | Comparison between nodules of WT, NF737 and MS240 lines | Medicago truncatula | roots | Arrays | AFFY_MED_2013_05 | gene knock out | 9 |
| AFFY_MeJA_Arabidopsis | Study of the effect of C2 on the transcriptome and the response to MeJA | Arabidopsis thaliana | whole plant | Arrays | AFFY_MeJA_Arabidopsis | gene knock in (transgenic),treated vs untreated comparison | 12 |
| AFFY_meloidogyne_rice | Oryza sativa genes expressed in the early compatible interaction with root-knot nematodes Meloidogyne graminicola. | Oryza sativa | roots | Arrays | AFFY_meloidogyne_rice | normal vs disease comparison,time course | 9 |
| AFFY_Meloidogyne_rice2 | Oryza sativa genes expressed in the early compatible interaction with root-knot nematodes Meloidogyne incognita | Oryza sativa | roots | Arrays | AFFY_meloidogyne_rice2 | normal vs disease comparison | 6 |
| AFFY_mildey_vitis | Gene expression patterns associated to the grapevine resistance to downy mildew derived from Muscadinia rotundifolia | Vitis vinifera | rosette | Arrays | AFFY_mildey_vitis | normal vs disease comparison | 12 |
| AFFY_Nitrogen_Medicago | Regulation of nitrogen acquisition (NO3-, NH4+ et N2) by the nitrogen status of the whole plant Medicago truncatula #PubMed:18287487 | Medicago truncatula | aerial, roots | Arrays | AFFY_Nitrogen_Medicago | treatment variations | 26 |
| AFFY_ORLEANS_CIRCAD | rythme circadien dans lexpression des gènes impliqués dans la formation du bois de peuplier | Populus tremula x Populus alba | stem | Arrays | circad_pop1 | time course | 20 |
| AFFY_pathogen_Medicago | Identification of key genes involved in the establishment of symbiotic and pathogenic plant-microorganism interactions #PubMed:22360638 | Medicago truncatula | roots | Arrays | AFFY_pathogen_Medicago | organ comparison | 12 |
| AFFY_pathogen_rice | Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea #PubMed:17905473 | Oryza sativa | rosette | Arrays | AFFY_pathogen_rice | normal vs disease comparison,time course,treated vs untreated comparison | 8 |
| AFFY_PetalDvt_Lyon_Ros... | Flower/Petal initiation and development in roses #PubMed:22194838 | Rosa hybrida | petal | Arrays | AFFY_PetalDvt_Lyon_Rose | scented vs non scented flowers | 4 |
| AFFY_Phloem_ATh1 | transcriptome octopus | Arabidopsis thaliana | whole plant | Arrays | AFFY_Phloem_ATh1 | gene knock in (transgenic),gene knock out | 6 |
| AFFY_POP_2011_08 | TRANSCRIPTOMIC ANALYSIS OF POPLAR STEM ACCOMMODATION TO REPEATED BENDING #PubMed:24684233 | Populus tremula x Populus alba | stem | Arrays | POPLAR ESTRADIOL STUDY | time course | 18 |
| AFFY_POP_2011_08 | TRANSCRIPTOMIC ANALYSIS OF POPLAR STEM ACCOMMODATION TO REPEATED BENDING | Populus tremula x Populus alba | stem | Arrays | POPLAR BENT STUDY | gene knock in (transgenic) | 53 |
| AFFY_POPSEC_Nancy_Leav... | Molecular bases of acclimatation and adaptation to water deficit in poplar #PubMed:21073700 | Populus deltoides x Populus nigra | rosette | Arrays | AFFY_POPSEC_Nancy_Leaves2008_poplar | treated vs untreated comparison | 24 |
| AFFY_POPSEC_Nancy_Leav... | Molecular bases of acclimatation and adaptation to water deficit in poplar | Populus deltoides x Populus nigra | rosette | Arrays | AFFY_POPSEC_Nancy_Leaves2007_poplar | treated vs untreated comparison | 45 |
| AFFY_POPSEC_Nancy_POPH... | Molecular bases of acclimation and adaptation to water deficit in poplar | Populus deltoides x Populus nigra | roots | Arrays | AFFY_POPSEC_Nancy_POPHYDRO_Roots_poplar | treated vs untreated comparison | 4 |
| AFFY_POPSEC_Nancy_Root... | Molecular bases of acclimation and adaptation to water deficit in poplar | Populus deltoides x Populus nigra | roots | Arrays | AFFY_POPSEC_Nancy_Roots_poplar | treated vs untreated comparison | 45 |
| AFFY_POPSEC_Nancy_Stom... | Molecular bases of acclimation and adaptation to water deficit in poplar | Populus deltoides x Populus nigra | rosette | Arrays | AFFY_POPSEC_Nancy_Stomata_poplar | treated vs untreated comparison | 45 |
| AFFY_Ralstonia_Medicag... | Transcriptome analysis of the interaction Medicago truncatula - Ralstonia solanacearum #PubMed:24325235 | Medicago truncatula | roots | Arrays | AFFY_Ralstonia_Medicago | normal vs disease comparison,time course | 27 |
| AFFY_Ralstonia_Peeters... | Ralstonia solanacearum effector-specific effect on Medicago truncatula trancriptome. | Medicago truncatula | roots | Arrays | AFFY_Ralstonia_Peeters_Medicago | gene knock out,normal vs disease comparison,time course,treated vs untreated comparison | 24 |
| AFFY_rewatering_poplar | Global gene expression in young differentiating xylem of poplar in response to a drought rewatering cycle | Populus tremula x Populus alba | stem | Arrays | rewatering | treated vs untreated comparison | 6 |
| AFFY_Rice_2011_03 | Transcriptomic study of the rice seed compartimentation during germination #PubMed:29213276, 25008975 | Oryza sativa | embryonic axis, endosperm | Arrays | AFFY_Compartimentation_Rice_Albumen_Embryon | organ comparison,time course | 37 |
| AFFY_RICE_2011_07 | : Transcriptomic analysis of rice leaves challenged with virulent and avirulent Xoo strains | Oryza sativa | caulin leaf | Arrays | AFFY_RIZ_2011_07 | avirulent vs virulent | 18 |
| AFFY_RICE_2012_01 | Transcriptomic study of rice seed ageing | Oryza sativa | embryonic axis | Arrays | IVT | treated vs untreated comparison | 12 |
| AFFY_RICE_2012_01 | Transcriptomic study of rice seed ageing | Oryza sativa | embryonic axis | Arrays | OVATION | treated vs untreated comparison | 6 |
| AFFY_RNAI_CADpoplar | Transcriptome analysis of RNAi-CAD transgenic poplars | Populus tremula x Populus alba | xylem | Arrays | AFFY_RNAI_CADpoplars | normal vs rnai mutant comparaison | 13 |
| AFFY_ROSE_2012_06 | Rose perfume studies #PubMed:26138978 | Rosa chinensis | petal | Arrays | AFFY_ROSE_2012_06 | normal vs rnai mutant comparaison | 8 |
| AFFY_seed_kinetic_Whea... | Transcriptomic wheat seed #PubMed:20697765, 22136458 | Triticum aestivum | seed | Arrays | AFFY_seed_kinetic_Wheat | time course | 10 |
| AFFY_Strigolactone_Sun... | Identification of Strigolactone -regulated genes in sunflower | Helianthus annuus | roots | Arrays | AFFY_Strigolactone_Sunflower | treated vs untreated comparison | 24 |
| AFFY_SUNFLOWER_2010_13 | ROS and hormones in sunflower seed dormancy. | Helianthus annuus | embryonic axis | Arrays | AFFY_SUNFLOWER_2010_13 | treated vs untreated comparison | 12 |
| AFFY_SUNFLOWER_2011_02 | Effect of frost on sunflower | Helianthus annuus | aerial | Arrays | AFFY_SUNFLOWER_2011_02 | treated vs untreated comparison | 12 |
| AFFY_Sunyfuel_drought_... | Sunyfuel #PubMed:23056196 | Helianthus annuus | caulin leaf | Arrays | AFFY_Sunyfuel_drought_Sunflower | treated vs untreated comparison | 96 |
| AFFY_syringae_Malaga_A... | Role of different proteases in plant defence | Arabidopsis thaliana | caulin leaf | Arrays | AFFY_syringae_Malaga_Athaliana | gene knock out,normal vs antisens mutant comparison | 24 |
| AFFY_TOUR_2010_21 | Assessing drought stress transcriptomics in Helianthus annus in field cultures | Helianthus annuus | caulin leaf | Arrays | AFFY_TOUR_2010_21 | treated vs untreated comparison | 24 |
| AFFY_TOUR_2012-02 | Study of sunflower seed dormancy by translatome analysis #PubMed:30127315, 25157915 | Helianthus annuus | seed | Arrays | AFFY_TOUR_2012-02 | time course,treated vs untreated comparison | 18 |
| AFFY_Xoo_Rice | Transcriptomics-based identification of Xoo strain BAI3 Talc targets in rice #PubMed:21679014 | Oryza sativa | aerial | Arrays | AFFY_Xoo_Rice | wt vs virulence mutant | 9 |
| AFFY_ZeaWall_RIL_Maize | Expression studies in 5 early maize RIL with contracted allelic patterns at major QTL positions. | Zea mays | ear internode | Arrays | AFFY_ZeaWall_RIL_Maize | genotype comparaison,time course | 20 |
| AU05-01_P25 | P25 Transgenic Arabidopsis.
Characterization of genes differentially expressed in roots of transgenic arabidopsis lines expressing the p25 protein of beet necrotic yellow vein virus. #PubMed:20602166 | Arabidopsis thaliana | roots | Arrays | Stages 1.02-1.04 and 1.06 | normal vs transgenic comparaison | 8 |
| AU05-02_FWA | Effect of DNA hypomethylation on gene expression | Arabidopsis thaliana | pollen | Arrays | FWA-Pollen | gene knock out | 6 |
| AU05-02_FWA | Effect of DNA hypomethylation on gene expression | Arabidopsis thaliana | rosette | Arrays | FWA-leaves | gene knock out | 7 |
| AU05-03_GABA | Transcriptomic analysis of pop2-1 mutant in Arabidopsis thaliana : a step towards elucidation of the role of GABA in plants. #PubMed:21471118, 23148892 | Arabidopsis thaliana | whole plant | Arrays | Ler vs pop2-1: GABA over-accumulation effects | gene knock out,time course | 16 |
| AU05-05_Rhodococcus | Molecular analysis of symptom development on Arabidopsis Thaliana by the pathogenic bacterium Rhodococcus fascians. #PubMed:19118125 | Arabidopsis thaliana | stem | Arrays | Rhodococcus response | normal vs disease comparison,time course | 12 |
| AU06-01_ITEGE | Impact of Transposable Elements on Gene Regulation | Arabidopsis thaliana | aerial, flower, rosette, seedling | Arrays | Ecotypes comparison (Col0 and Ler0) | ecotype comparison | 8 |
| AU06-01_ITEGE | Impact of Transposable Elements on Gene Regulation | Arabidopsis thaliana | aerial, flower, seedling | Arrays | Impact of the gcn2 mutation | gene knock out | 6 |
| AU06-01_ITEGE | Impact of Transposable Elements on Gene Regulation | Arabidopsis thaliana | aerial, flower, seedling | Arrays | Impact of SINE RNA | gene knock in (transgenic) | 6 |
| AU06-02_Bzo2h | Functional Characterization of AtbZIP9 | Arabidopsis thaliana | whole plant | Arrays | ZIP9_target_genes | gene knock in (transgenic),gene knock out | 9 |
| AU06-03_TSN_FJ | Tudor-SN knockout #PubMed:20484005 | Arabidopsis thaliana | roots | Arrays | TSN_FJ | gene knock in (transgenic),gene knock out | 12 |
| AU07-01_PLD-SA | Role of phospholipase D in salycilc acid signaling in Arabidopsis thaliana suspension cells. #PubMed:19304931 | Arabidopsis thaliana | cell culture/primary cell | Arrays | identification of SA responsive genes dependent on PLD activation | treated vs untreated comparison | 12 |
| AU07-02_TRV | Functional Genomic study in virus-infected plants. #PubMed:25358898 | Arabidopsis thaliana | aerial | Arrays | Arabidopsis transcriptome microarray from virus infected plants. | normal vs disease comparison | 6 |
| AU07-02_TRV | Functional Genomic study in virus-infected plants. | Arabidopsis thaliana | roots | Arrays | Arabidopsis transcriptome microarray from virus infected roots. | normal vs disease comparison | 6 |
| AU07-02_TRV | Functional Genomic study in virus-infected plants. | Arabidopsis thaliana | rosette | Arrays | Arabidopsis transcriptome microarray from virus infected leafs. | normal vs disease comparison | 6 |
| AU07-03_MYB77 | Functional characterization of AtMYB77 transcription factor. | Arabidopsis thaliana | seedling | Arrays | WT/MYB77 | gene knock in (transgenic),gene knock out | 6 |
| AU07-04_VIP1 | Identification of the VIP1 targets | Arabidopsis thaliana | whole plant | Arrays | per8::VIP micro-array | treated vs untreated comparison | 12 |
| AU07-05_Groundworms | Effect of earthworms on Arabidopsis transcriptome. #PubMed:23226498 | Arabidopsis thaliana | aerial, roots | Arrays | Groundworms | treated vs untreated comparison | 8 |
| AU07-06_GDH | Transcriptomique analysis of GDH | Arabidopsis thaliana | roots, rosette, stem | Arrays | Trancript profiling in Arabidopsis GDH mutant. | wt vs mutant comparison | 21 |
| AU07-07_Salmonella | Interactions between plants and human pathogenic bacteria. #PubMed:21915285 | Arabidopsis thaliana | whole plant | Arrays | Infection with Salmonella or Pseudomonas or E. coli. | treated vs untreated comparison | 8 |
| AU07-08_SQE | Plant Small RNAs. | Arabidopsis thaliana | whole plant | Arrays | NaCl | treated vs untreated comparison | 6 |
| AU07-09_Alternaria | Changes in gene expression in MKK2 and MKKKC5 mutants | Arabidopsis thaliana | rosette | Arrays | Alternaria | treatment variations | 18 |
| AU07-09_Alternaria | Changes in gene expression in MKK2 and MKKKC5 mutants | Arabidopsis thaliana | rosette | Arrays | MKK2EE and mkkkc5 mutants | wt vs mutant comparison | 6 |
| AU07-10_mpk | Transcriptomic analysis of MAPK KOs mutants under normal growing conditions. | Arabidopsis thaliana | seedling | Arrays | BB | gene knock out | 2 |
| AU07-10_mpk | Transcriptomic analysis of MAPK KOs mutants under normal growing conditions. | Arabidopsis thaliana | seedling | Arrays | mpk | gene knock out | 14 |
| AU07-11_haiku | Study of small seed mutants. | Arabidopsis thaliana | seed | Arrays | Compare haiku mutants with wildtype | gene knock out | 14 |
| AU07-12_GeminiSelSup | Biodiversity and functional genomics of endogenous small RNAs induced upon biotic and abiotic stresses in plants. #PubMed:21441437 | Arabidopsis thaliana | whole plant | Arrays | GEMSUP | gene knock in (transgenic) | 12 |
| AU07-13_SQE1 | Functional analysis and biotechnological application of genes involved in drought and salt stress tolerance in plants. | Arabidopsis thaliana | rosette | Arrays | SQE1 | gene knock out | 6 |
| AU08-01_Cytb561 | Ascorbate metabolism in plants: physiological function and biochemical properties of cytochromes b561 | Arabidopsis thaliana | rosette | Arrays | cytb1-1 | gene knock out | 8 |
| AU08-02_mkk1-mkk2 | Transcriptome of mkk1-mkk2 mutants. | Arabidopsis thaliana | seedling | Arrays | mkk1-mkk2 | gene knock out | 6 |
| AU08-04_DFO | Analysis of Arabidopsis transcriptome in response to deferoxamine. #PubMed:24501001 | Arabidopsis thaliana | roots, rosette | Arrays | Analysis of deferoxamine treated leaves and roots | time course,treated vs untreated comparison | 16 |
| AU08-05_p25Ind | Global transcriptome deregulation of P25 expressing Arabidospis thaliana. #PubMed:20602166 | Arabidopsis thaliana | roots | Arrays | Comparison between constitutive and inducible p25 plants | gene knock in (transgenic) | 20 |
| AU08-06_mpk6_heat_stre... | Transcriptomic analysis of mpk6 KO mutant after heat stress treatment #PubMed:22236066 | Arabidopsis thaliana | seedling | Arrays | AU08-06_mpk6_heat_stressed | treated vs untreated comparison | 8 |
| AU-09-01_mpk_flagellin... | Flagellin response in mpk mutants. | Arabidopsis thaliana | seedling | Arrays | mpk4 flg22 | treated vs untreated comparison | 4 |
| AU-09-01_mpk_flagellin... | Flagellin response in mpk mutants. | Arabidopsis thaliana | seedling | Arrays | mpk3 flg22 | treated vs untreated comparison | 4 |
| AU-09-01_mpk_flagellin... | Flagellin response in mpk mutants. | Arabidopsis thaliana | seedling | Arrays | Bak1 bkk1 flg22 | treated vs untreated comparison | 4 |
| AU-09-01_mpk_flagellin... | Flagellin response in mpk mutants. | Arabidopsis thaliana | seedling | Arrays | mpk3 | wt vs mutant comparison | 4 |
| AU-09-01_mpk_flagellin... | Flagellin response in mpk mutants. | Arabidopsis thaliana | seedling | Arrays | mpk6 flg22 | treated vs untreated comparison | 4 |
| AU-09-01_mpk_flagellin... | Flagellin response in mpk mutants. | Arabidopsis thaliana | seedling | Arrays | mpk6 | gene knock out | 4 |
| AU-09-01_mpk_flagellin... | Flagellin response in mpk mutants. | Arabidopsis thaliana | seedling | Arrays | Bak1Bkk1 | gene knock out | 4 |
| AU-09-01_mpk_flagellin... | Flagellin response in mpk mutants. | Arabidopsis thaliana | seedling | Arrays | Col-0 flg22 | treated vs untreated comparison | 4 |
| AU09-02_WOX14 | Gene expression affected by the AtWOX14 gene mutation. | Arabidopsis thaliana | seedling | Arrays | WOX13 orthologous group | gene knock out | 8 |
| AU09-03_gamma-irradiat... | Transcriptomic analysis of effetcs of ionising radiation on Arabidopsis thaliana. #PubMed:22921004 | Arabidopsis thaliana | whole plant | Arrays | 2 doses of ionising radiations (X-rays) | dose response,time course | 12 |
| AU09-04_GeminiSilSup2 | PLASMAR. Biodiversity and functional genomics of endogenous small RNAs induced upon biotic and abiotic stresses in plants. | Arabidopsis thaliana | whole plant | Arrays | GEMSUPV2 | gene knock in (transgenic) | 6 |
| AU10-01_overexpression... | Transcriptomic analysis of the overexpression of Oxi1 | Arabidopsis thaliana | rosette | Arrays | AU10-01_overexpressionoxi1 | normal vs transgenic comparaison | 4 |
| AU10-03_hub1 | Kinetics of gene expression after light exposure in hub1-3 mutant compared to wild-type #PubMed:22829781 | Arabidopsis thaliana | seedling | Arrays | Kinetics of gene expression after light exposure in hub1-3 mutant compared to wild-type | genotype comparaison,time course | 12 |
| AU10-04_phytoremediati... | phytoremediation #PubMed:27769163 | Arabidopsis thaliana | whole plant | Arrays | Impact of sucrose on the tolerance of phenanthrene | treated vs untreated comparison | 33 |
| AU10-06_Salmonella | Trancriptomic analysis in Salmonella typhimurium infection | Arabidopsis thaliana | seedling | Arrays | invA_vs_14028S | normal vs disease comparison | 4 |
| AU10-06_Salmonella | Trancriptomic analysis in Salmonella typhimurium infection | Arabidopsis thaliana | seedling | Arrays | Salmonella_prgH | normal vs disease comparison | 4 |
| AU10-06_Salmonella | Trancriptomic analysis in Salmonella typhimurium infection | Arabidopsis thaliana | seedling | Arrays | Salmonella_14028S | normal vs disease comparison | 4 |
| AU10-06_Salmonella | Trancriptomic analysis in Salmonella typhimurium infection | Arabidopsis thaliana | seedling | Arrays | Salmonell invA | normal vs antisens mutant comparison | 4 |
| AU10-07_MPK4gof | Transcriptome study of mpk4 complemented line with a hyperactive form of MPK4 (MPK4 GOF). | Arabidopsis thaliana | whole plant | Arrays | mpk4/MPK4 GOF vs mpk4/MPK4 vs Col0 | genotype comparaison | 8 |
| AU10-09_GemSupV2TS-7 | Biodiversity and functional genomics of endogenous small RNAs induced upon biotic and abiotic stresses in plants. | Arabidopsis thaliana | whole plant | Arrays | GEMSUPV2TS-7 | gene knock in (transgenic) | 6 |
| AU10-10_Cold | PI4kinases and Long-chain bases kinases in response to cold stress #PubMed:24758581 | Arabidopsis thaliana | whole plant | Arrays | defenses mechanism in response to cold stress | treated vs untreated comparison | 16 |
| AU10-11_DspA | Gene expression in response to the expression of the bacterial type 3 effector DspA/E #PubMed:23634775 | Arabidopsis thaliana | seedling | Arrays | Induction of DspA/E expression in a transgenic A. thaliana line | gene knock out,genotype comparaison,treated vs untreated comparison | 8 |
| AU10-12_PA | Phosphatidic acid in gene expression #PubMed:23964284 | Arabidopsis thaliana | cell culture/primary cell | Arrays | Phosphatidic acid in gene expression | treated vs untreated comparison | 30 |
| AU10-13_CellWall | Differentially expressed genes in stems of Arabidopsis deficient in monolignol export
and in stems of Arabidopsis plants expressing a hydroxycinnamoyl-CoA hydratase/lyase #PubMed:22458713 | Arabidopsis thaliana | stem | Arrays | cell wall mutants | gene knock in (transgenic),normal vs transgenic comparaison | 9 |
| AU10-14_Fer | Role of ethylene in Fe deficieny response signalling #PubMed:21586684, 22212120 | Arabidopsis thaliana | whole plant | Arrays | Response of ein3eil1 mutants to Fe deficiency | gene knock out,treated vs untreated comparison | 12 |
| AU10-15_cineroots | transdifferenciation from root to shoot apical meristem | Arabidopsis thaliana | roots | Arrays | transdifferenciation | time course | 8 |
| AU11-01_WOX14bis | Floral stem gene expression affected by the AtWOX14 gene mutation | Arabidopsis thaliana | stem | Arrays | Transcriptome analyses of N8514 and wox14 | gene knock out,normal vs transgenic comparaison | 4 |
| AU11-02_CHO-THF | Transcriptomic and metabolic changes in Arabidopsis thaliana supplemented with 5-CHO-THF and its relationship with the accumulation and transformation to THF active derivatives | Arabidopsis thaliana | caulin leaf, roots | Arrays | shoots and roots treated with Methotrexate and 5-Formyl-THF | treated vs untreated comparison | 18 |
| AU11-03_Gravite | Action of microgravity on root development | Arabidopsis thaliana | roots | Arrays | Action of microgravity on root development | treated vs untreated comparison | 12 |
| AU11_04_Benzene | Study of benzene metabolism in higher plants | Brassica napus | caulin leaf | Arrays | Benzene effects on Brassica leaves | treated vs untreated comparison | 2 |
| AU12-01_Detox | Study of benzene metabolism in higher plants. | Brassica oleracea | caulin leaf | Arrays | Benzene effects on leaves | treated vs untreated comparison | 8 |
| AU12-06_CPSF30 | Cell death control by CPSF30. #PubMed:24706550 | Arabidopsis thaliana | rosette | Arrays | cpsf30 mips1 transcriptome | genotype comparaison | 8 |
| AU13-01_PI-PLC | Inhibition of the PI-PLC by U73122 | Arabidopsis thaliana | cell culture/primary cell | Arrays | Inhibition des PI-PLC par le U73122 | treated vs untreated comparison,treatment variations | 6 |
| AU13-03_CUC2 | Morphodynamics in Plants: from gene to shape. | Arabidopsis thaliana | flower bud | Arrays | Identification of target genes regulated by CUC2 in A.thaliana shoot apical meristem. | genotype comparaison | 6 |
| AU13-04_crl | Transcriptome comparison of the crl mutant and CDT1-RNAi line #PubMed:25037213 | Arabidopsis thaliana | seedling | Arrays | CDT1_bis | normal vs rnai mutant comparaison,normal vs transgenic comparaison | 8 |
| AU13-06_FIT | Differential gene expression in A. thaliana roots depending on iron supply and FIT (FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR) abundance | Arabidopsis thaliana | roots | Arrays | Fe-FIT-Diff | normal vs transgenic comparaison,treated vs untreated comparison | 18 |
| AU13-07_Ox | bHLH039 overexpression results in iron accumulation dependent on the FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (FIT) #PubMed:28883478 | Arabidopsis thaliana | seedling, whole plant | Arrays | Comparison 39Ox and WT samples with or without Fe | normal vs transgenic comparaison,treated vs untreated comparison | 12 |
| AU13-08_AtpPLAII-alpha | None | Arabidopsis thaliana | rosette | Arrays | Transcriptional profilling of Arabidopsis plants. | genotype comparaison,treated vs untreated comparison | 12 |
| AU13-11_Gravity | Gravitational signature of synchronized cell cultures in particular cell cycle stages | Arabidopsis thaliana | cell culture/primary cell | Arrays | Gravity | time course,treated vs untreated comparison | 12 |
| AU13-12_Polysome | transcriptomic and translatomic analysis of Arabidopsis seeds #PubMed:26019300 | Arabidopsis thaliana | seed | Arrays | Transcriptome and translatome of Arabidopsis WT seeds according to dormancy | time course | 24 |
| AU13-14_MYB1 | MYB1s partners | Arabidopsis thaliana | stem | Arrays | transcript modification by MYB1 interactants | normal vs transgenic comparaison | 12 |
| AU13-15_sup62 | Transcriptome sup62 and cpsf30 mpk4 | Arabidopsis thaliana | aerial,rosette | Arrays | 4 mutants | gene knock out,genotype comparaison | 10 |
| AU14-01_Tn | Projet TN 2014 : effet sur Arabidopsis thaliana. | Arabidopsis thaliana | caulin leaf | Arrays | Observation des effets du produit Tn sur lexpression des gènes dA.thaliana. | dose response | 10 |
| AU14-03_BIGUN | Functional characterization of BIGUN proteins in Arabidopsis thaliana. | Arabidopsis thaliana | rosette | Arrays | bigun transcriptomics | gene knock out,normal vs disease comparison | 18 |
| AU14-04_INASEED | INASEEDarray #PubMed:30998684 | Arabidopsis thaliana | seed,seedling | Arrays | INASEEDarray | gene knock out | 18 |
| AU14-05_pi4kbeta1beta2 | pi4kbeta1beta2 sid2 triple mutant | Arabidopsis thaliana | rosette | Arrays | pi4kbeta1beta2 sid2 triple mutant | genotype comparaison | 8 |
| AU14-08_xrn_vcs | Seed transcriptome of xrn4-5 and vcs-8 mutants. #PubMed:28126845 | Arabidopsis thaliana | seed | Arrays | Seed transcriptome of xrn4-5 and vcs-8 mutants. | gene knock out | 9 |
| AU14-09_Silice | Impact on Arabidopsis thaliana transcriptome of multifunctional silica nanoparticles based on metal atom clusters. | Arabidopsis thaliana | cell culture/primary cell | Arrays | CLUSTOP transcriptomics. | treated vs untreated comparison | 10 |
| AU14-10_WD40 | Effet of light on translatome of Arabidopsis seeds during germination | Arabidopsis thaliana | seed | Arrays | Effet of light on translatome of Arabidopsis seeds during germination | treated vs untreated comparison | 12 |
| AU14-11_Levure | Study the genes expression by a residue of culture | Arabidopsis thaliana | cell culture/primary cell | Arrays | Study of a kinetic answer | time course,treated vs untreated comparison | 8 |
| AU15-01_IRON-FIT | Differential gene expression in A. thaliana roots depending on iron supply and FIT (FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR) abundance. #PubMed:27716045 | Arabidopsis thaliana | seedling | Arrays | Fe-FIT-Diff_6d | gene knock in (transgenic),gene knock out,treated vs untreated comparison | 18 |
| AU15-02_TRX | Redox regulation in plants. | Arabidopsis thaliana | aerial | Arrays | Effect of FTR mutation on Arabidopsis trancriptome | gene knock out | 12 |
| AU15-04_Xeno | Molecular analysis of signal transduction mechanisms involved in plant organic pollutant interactions. #PubMed:30080643 | Arabidopsis thaliana | rosette | Arrays | Transcriptomic analysis of the effects of low levels of atrazine and by-products | treated vs untreated comparison | 8 |
| AU15-05_FIT | Differential gene expression in A. thaliana seedlings depending on the introduction of a point mutation in FIT (FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR) under iron deficient conditions. | Arabidopsis thaliana | seedling | Arrays | Differential gene expression in A.Tha. depending on mutation in FIT | gene knock out,genotype comparaison,normal vs transgenic comparaison | 12 |
| AU17-01_Dgk5.1_bis | Transcriptome analysis of dgk5 mutant (with 3 biological replicats). | Arabidopsis thaliana | seedling | Arrays | Transcriptome analysis of dgk5 mutant in response to flagellin | treated vs untreated comparison | 12 |
| BLAN08_RNApaths | Integrating RNA Quality Control and RNA Silencing Pathways | Arabidopsis thaliana | aerial | Arrays | Analyses of endogenous RNA substrates of XRN and exosome and PTGS pathways. | gene knock in (transgenic),gene knock out | 34 |
| Blanc-08-01_2012_01_RN... | RNAPATHS-3 | Arabidopsis thaliana | seedling | Arrays | RNAPATHS--3_02/2012 | genotype comparaison | 16 |
| Blanc-08-01_2012_01_RN... | study the role of AtNSRs proteins in the regulation of gene expression #PubMed:25073154 | Arabidopsis thaliana | whole plant | Arrays | AtNSRs | gene knock out | 12 |
| BRA-INRA09-01_BIOEN | Energetic Homeostasis and Sugar Signaling | Arabidopsis thaliana | whole plant | Arrays | Cordycepin | treatment variations | 15 |
| BRA-INRA09-01_BIOEN | Energetic Homeostasis and Sugar Signaling | Arabidopsis thaliana | whole plant | Arrays | BZIP9 | genotype comparaison | 24 |
| BRA-INRA09-01_BIOEN | Energetic Homeostasis and Sugar Signaling | Arabidopsis thaliana | whole plant | Arrays | abi4 | wt vs mutant comparison | 15 |
| BRA-INRA09-02_BIOEN_Ni... | Nitrate induction - nlp mutants #PubMed:23591880 | Arabidopsis thaliana | whole plant | Arrays | Nitrate induction - nlp mutants | gene knock out,time course | 26 |
| CAT-seq | Comparative Arabidopsis Transcriptome -Sequencing #PubMed:27742662 | Arabidopsis thaliana | aerial | Arrays | CRR4_DYW1_Col0 | genotype comparaison | 6 |
| CAT-seq | Comparative Arabidopsis Transcriptome -Sequencing | Arabidopsis thaliana | aerial, flower bud | Arrays | BF_vs_F | organ comparison | 4 |
| CEA03-01_Cadmium | Dynamic of the Arabidopsis thaliana transcriptome following a cadmium exposition #PubMed:16797112 | Arabidopsis thaliana | roots, rosette | Arrays | Cadmium effect on roots and leaves | dose response,time course | 54 |
| CEA03-02_Translatome-C... | Analysis of the translatome of Arabidopsis in response to Cadmium stress #PubMed:21252299 | Arabidopsis thaliana | cell culture/primary cell | Arrays | Translatome-Cd | transcribed vs translated,treated vs untreated comparison | 12 |
| CEA05-01_carbonic-anhy... | Comparative transcriptome analysis between carbonic anhydrase mutants and wild type Arabidopsis | Arabidopsis thaliana | rosette | Arrays | carbonic anhydrase (1 or 2) simple or double mutants | gene knock out | 8 |
| CEA06-01_Uranyl_nitrat... | Transcriptomic analysis of uranyl response in Arabidopsis thaliana | Arabidopsis thaliana | rosette | Arrays | Time course Uranyl nitrate response | organ comparison,time course,treated vs untreated comparison | 36 |
| CEA06-02_folate | dynamics of Arabidopsis transcriptome during folate depletion #PubMed:18931140 | Arabidopsis thaliana | cell culture/primary cell | Arrays | methotrexate treatment | time course,treated vs untreated comparison | 14 |
| CEA10-01_Phosphate | Transcripomics on the Arabidopsis Root tip during phosphate starvation | Arabidopsis thaliana | roots | Arrays | Transcripomics on the Arabidopsis Root tip during phosphate starvation | time course,treated vs untreated comparison | 12 |
| CEA10-02_Light | Photooxidative stress and light acclimation in the PSII antenna-deficient ch1 mutant | Arabidopsis thaliana | aerial | Arrays | Photooxidative stress | genotype comparaison,treated vs untreated comparison | 24 |
| CEA10-03_Cyclocitral | Characterization of β-cyclocitral effects in Arabidopsis thaliana. #PubMed:22431637 | Arabidopsis thaliana | aerial | Arrays | Analysis of Arabidopsis transcriptome in response to b-cyclocitral treatment | treated vs untreated comparison | 6 |
| CEA11-02_Phosphatin | Phosphatin effect on Arabidopsis | Arabidopsis thaliana | roots | Arrays | Transcriptomic analysis of Phosphatin effect | treated vs untreated comparison | 9 |
| CEA12-02_ChloroSap | Chloro-Sap #PubMed:28220595 | Arabidopsis thaliana | aerial | Arrays | Comparison after 4 and 52h | normal vs transgenic comparaison,time course | 18 |
| CEA13-01_oxi1 | Transcriptomic analysis on the effect of oxi1 mutation under high light. #PubMed:26747288 | Arabidopsis thaliana | rosette | Arrays | oxi1 Transcriptome | genotype comparaison | 8 |
| FAPESP-BRA-INRA-10-01_... | Dark hypocotyls TOR RNAi | Arabidopsis thaliana | hypocotyl | Arrays | Dark hypocotyls TOR RNAi | normal vs rnai mutant comparaison | 6 |
| GEN26_DroughtStress | Transcriptional and translational status of genes responding to drought stress | Arabidopsis thaliana | aerial | Arrays | Drought | treated vs untreated comparison | 12 |
| GEN45-Carpel_developme... | Modelling the Transcriptional Network in Arabidopsis Fruit Development. | Arabidopsis thaliana | flower | Arrays | crc1 mutant | gene knock out | 2 |
| GEN45-Carpel_developme... | Modelling the Transcriptional Network in Arabidopsis Fruit Development. | Arabidopsis thaliana | aerial, flower | Arrays | Overexpressors | treated vs untreated comparison | 32 |
| GnP06-01b_AgriArray | New developments towards a genetic and diagnosis use of plant microarrays #PubMed:21900481 | Arabidopsis thaliana | caulin leaf, roots | Arrays | Nitrogen starvation | time course,tissue comparison | 6 |
| GnP06-01b_AgriArray | New developments towards a genetic and diagnosis use of plant microarrays | Arabidopsis thaliana | roots, rosette | Arrays | Multiplexage : dual-target hybridization microarray experiment | genotype and ecotype comparison | 48 |
| GnP06-02_Starch | Initiation synthesis and degradation : an integrated approach toward the understanding of starch metabolism and formation in plants. | Arabidopsis thaliana | rosette | Arrays | ISD-Starch | gene knock out | 60 |
| GnP06-03_MicroTrAc | Gene profiling of Turnip Crinkle Virus (TCV) siRNA in mutants at generation G1 and G10. | Arabidopsis thaliana | flower | Arrays | Endogenous Hairpins-IR71 targets | gene knock out | 6 |
| GnP06-03_MicroTrAc | Gene profiling of Turnip Crinkle Virus (TCV) siRNA in mutants at generation G1 and G10. | Arabidopsis thaliana | rosette | Arrays | Gene profiling of Turnip Crinkle Virus (TCV) siRNA in mutants at generation G1 and G11 | gene knock out,treated vs untreated comparison | 20 |
| GnP06-03_MicroTrAc | Gene profiling of Turnip Crinkle Virus (TCV) siRNA in mutants at generation G1 and G10. | Arabidopsis thaliana | rosette | Arrays | Gene profiling of viral siRNA in mutants at generation G1. | gene knock out,treated vs untreated comparison | 8 |
| Gnp07_Regeneome_cuc2 | Gnp07_Regeneome_cuc2 | Arabidopsis thaliana | aerial | Arrays | CUC2 | tissue comparison,wt vs mutant comparison | 16 |
| Gnp07_Regeneome_embryo... | somatic embryogenesis | Arabidopsis thaliana | callus | Arrays | embryogenesis ws | tissue comparison | 6 |
| Gnp07_Regeneome_embryo... | somatic embryogenesis | Arabidopsis thaliana | callus | Arrays | embryogenesis col0 | tissue comparison | 8 |
| Gnp07_Regeneome_microd... | Transcriptome bias induce by protocols used in microdissection | Arabidopsis thaliana | flower | Arrays | microdissection vs no microdissection | treated vs untreated comparison | 4 |
| Gnp07_Regeneome_transd... | transdifferentiation of Root Apical Meristem to Shoot Apical Meristem | Arabidopsis thaliana | roots | Arrays | microdissection | time course | 8 |
| GNP07_RILKIT | Tools to optimize the use of RIL populations, for natural diversity studies and QTL cloning #PubMed:22453064 | Arabidopsis thaliana | aerial | Arrays | RILKIT-eQTL analysis (random pair design) | genotype and ecotype comparison | 327 |
| GnP10-01_GENOPEA | Genopea 3.2 #PubMed:31440268 | Pisum sativum | caulin leaf | Arrays | Reproductive and Vegetative leaves | time course,treated vs untreated comparison | 30 |
| GNP3-B4_Nitrogen_starv... | Improving the nitrogen use efficiency : from model plant to crop species.
#PubMed:21900481 | Arabidopsis thaliana, Brassica napus | roots, rosette | Arrays | Nitrogen starvation and re-supply | time course | 22 |
| GNP3_TRI33-Arabidoseed | Establishing the network of seed gene expression and analysis of its biodiversity | Arabidopsis thaliana | seed | Arrays | Embryo seed development | time course | 15 |
| GNP3_TRI33-Arabidoseed | Establishing the network of seed gene expression and analysis of its biodiversity | Arabidopsis thaliana | seed, silique and seed | Arrays | Seed specific genes | organ comparison | 3 |
| GNP3_TRI33-Arabidoseed | Establishing the network of seed gene expression and analysis of its biodiversity | Arabidopsis thaliana | silique and seed | Arrays | eQTL analysis (random pair design) | genotype and ecotype comparison | 160 |
| GNP3_TRI33-Arabidoseed | Establishing the network of seed gene expression and analysis of its biodiversity | Arabidopsis thaliana | silique and seed | Arrays | Seed development | time course | 4 |
| GNP3_TRI33-Arabidoseed | Establishing the network of seed gene expression and analysis of its biodiversity | Arabidopsis thaliana | seed | Arrays | Preliminary experiment:repetability | genotype and ecotype comparison | 8 |
| GnP_Blan06_TORPTEN | The signalisation way TOR/PTEN in Arabidospsis. #PubMed:22307851 | Arabidopsis thaliana | seedling | Arrays | RNAi Tor time course | normal vs rnai mutant comparaison | 24 |
| GnP_Blan06_TORPTEN | The signalisation way TOR/PTEN in Arabidospsis. | Arabidopsis thaliana | aerial | Arrays | LST8 | gene knock out | 8 |
| GnP_Blan06_TORPTEN | The signalisation way TOR/PTEN in Arabidospsis. | Arabidopsis thaliana | flower | Arrays | Overexpression of pten2a | gene knock in (transgenic) | 6 |
| NO27_Iron_signaling | Transcriptomic response to iron signaling | Arabidopsis thaliana | cell culture/primary cell | Arrays | Iron response | time course | 7 |
| PC_ARCOLE | Nitrogenous nutrition efficiency of canola in spring : identification of targets for plant breeding | Arabidopsis thaliana | aerial | Arrays | ARCOLE / PGPR | dose response,organ comparison,treated vs untreated comparison | 12 |
| PC_GeBPGPL_transcripto... | GeBP/GPL quadruple mutant and GPL2:VP16 transcriptomic | Arabidopsis thaliana | whole plant | Arrays | Growth on MS of quadruple and GPL2:VP16 | gene knock in (transgenic),gene knock out | 12 |
| RA03-02_Potyvirus | Transcriptional analysis of Arabidopsis thaliana infected by a potyvirus. | Arabidopsis thaliana | rosette | Arrays | Potyvirus | normal vs disease comparison | 4 |
| RA03-03_Protoplast | From protoplast to plant : transcriptome profiling from cell division to differentiation in Arabidopsis thaliana | Arabidopsis thaliana | aerial, cell culture/primary cell, protoplast, seedling | Arrays | transcriptome profiling from a protoplast culture of arabidopsis thaliana | time course | 15 |
| RA03-04_Elongation_iso... | Transcriptome analysis of the hypocotyl growth switch #PubMed:20819179 | Arabidopsis thaliana | whole plant | Arrays | plant germination | time course | 3 |
| RA03-04_Elongation_iso... | Transcriptome analysis of the hypocotyl growth switch | Arabidopsis thaliana | hypocotyl | Arrays | Isoxaben treatment | treated vs untreated comparison | 4 |
| RA03-04_Elongation_iso... | Transcriptome analysis of the hypocotyl growth switch | Arabidopsis thaliana | hypocotyl | Arrays | Time course | time course | 4 |
| RA03-05_Clubroot | Deciphering the Arabidopsis mechanisms of resistance to clubroot (Plasmodiophora brassicae) by differential analysis of transcriptome. #PubMed:23420032 | Arabidopsis thaliana | whole plant | Arrays | Club root response | normal vs disease comparison,time course | 12 |
| RA03-05_Clubroot | Deciphering the Arabidopsis mechanisms of resistance to clubroot (Plasmodiophora brassicae) by differential analysis of transcriptome. | Arabidopsis thaliana | roots, whole plant | Arrays | Clubroot CATMA-2 | organ comparison | 8 |
| RA03-06_Seed_endotheli... | Transcriptome analysis of the tannin-producing cells in Arabidopsis | Arabidopsis thaliana | seed | Arrays | Endothelium | gene knock out | 17 |
| RA03-07_TOR | Transcriptome analysis of TOR (Target of Rapamycin) mutant. | Arabidopsis thaliana | roots | Arrays | TOR | treated vs untreated comparison,wt vs mutant comparison | 29 |
| RA03-07_TOR | Transcriptome analysis of TOR (Target of Rapamycin) mutant. | Arabidopsis thaliana | roots | Arrays | TOR_RNAi | wt vs mutant comparison | 8 |
| RA04-01_msil | Identification of genes induced by fertilization | Arabidopsis thaliana | silique and seed | Arrays | msil | wt vs mutant comparison | 4 |
| RA04-02_AGO | Transcriptome of the argonaute (ago) mutant | Arabidopsis thaliana | hypocotyl | Arrays | AGO | gene knock out | 16 |
| RA04-03_Nin7 | atnin7-1 (atnlp7) in two different nitrogen conditions. #PubMed:18826430 | Arabidopsis thaliana | roots, rosette | Arrays | Nin7 | gene knock out | 14 |
| RA04-04_NRT2.4 | NRT2.4 NO3 transport mutant. | Arabidopsis thaliana | roots, rosette | Arrays | NRT2.4 | gene knock out | 4 |
| RA04-05_NO3-seed-dorma... | Nitrate control of Arabidopsis seed dormancy #PubMed:19074630 | Arabidopsis thaliana | seed | Arrays | dry seeds | treated vs untreated comparison | 6 |
| RA04-05_NO3-seed-dorma... | Nitrate control of Arabidopsis seed dormancy | Arabidopsis thaliana | seed | Arrays | siliques | treated vs untreated comparison | 3 |
| RA04-05_NO3-seed-dorma... | Nitrate control of Arabidopsis seed dormancy | Arabidopsis thaliana | seed | Arrays | soaked seeds | treated vs untreated comparison | 9 |
| RA04-06_PII | Study of PII mutant, a sensor of carbon and/or nitrogen status protein #PubMed:16545809 | Arabidopsis thaliana | aerial | Arrays | NH4 | wt vs mutant comparison | 8 |
| RA04-06_PII | Study of PII mutant, a sensor of carbon and/or nitrogen status protein | Arabidopsis thaliana | aerial | Arrays | 0-nitrogen | wt vs mutant comparison | 4 |
| RA04-06_PII | Study of PII mutant, a sensor of carbon and/or nitrogen status protein | Arabidopsis thaliana | aerial | Arrays | 1mM NO3 | wt vs mutant comparison | 4 |
| RA04-07_PGPR | Arabidopsis thaliana transcriptome analysis in response to plant growth promoting rhizobacteria (PGPR). #PubMed:18184068 | Arabidopsis thaliana | roots, rosette | Arrays | Profiling of the root architecture response to Phyllobacterium | treated vs untreated comparison | 4 |
| RA04-07_PGPR | Arabidopsis thaliana transcriptome analysis in response to plant growth promoting rhizobacteria (PGPR). | Arabidopsis thaliana | rosette | Arrays | Profiling of the PGPR induced systemic resistance (ISR) | normal vs rnai mutant comparaison,treated vs untreated comparison | 4 |
| RA04-07_PGPR | Arabidopsis thaliana transcriptome analysis in response to plant growth promoting rhizobacteria (PGPR). | Arabidopsis thaliana | rosette | Arrays | Trancriptional response to 3 rhizobacteria | treated vs untreated comparison | 4 |
| RA04-08_Senescence | Transcriptomic analysis of leaf senescence in Arabidopsis thaliana. #PubMed:17098848 | Arabidopsis thaliana | rosette | Arrays | Sugars and leaf senescence | treated vs untreated comparison | 12 |
| RA04-08_Senescence | Transcriptomic analysis of leaf senescence in Arabidopsis thaliana. | Arabidopsis thaliana | rosette | Arrays | Isogenic lines | near isogenic lines (hif) | 2 |
| RA05-01_Ethylene | Study of the ethylene respons in plants.Cellular elongation in the root and ethylene. #PubMed:23134674 | Arabidopsis thaliana | roots | Arrays | ACC-treated root vs. control root | treated vs untreated comparison | 6 |
| RA05-02_Erwinia | Regulation of the Arabidopsis transcriptome by the type three secretion system (TTSS) of Erwinia amylovora #PubMed:22316300 | Arabidopsis thaliana | rosette | Arrays | Erwinia | normal vs disease comparison | 12 |
| RA05-03_SGS | Transcriptome analysis of two mutants rdr6/sgs2 and sgs3 impaired in post-transcriptional gene silencing (PTGS) | Arabidopsis thaliana | flower, rosette | Arrays | SGS2_and_3 | gene knock in (transgenic) | 20 |
| RA05-04_Meiocytes | Transcriptomic of meiocytes. #PubMed:21815983 | Arabidopsis thaliana | meiocyte, roots, rosette, stamen | Arrays | Meiocyte transcriptome | organ comparison | 12 |
| RA05-04_Meiocytes | Transcriptomic of meiocytes. | Arabidopsis thaliana | rosette, stamen | Arrays | Meiocytes | total transcriptome knowledge | 2 |
| RA05-05_Procuste | Identification of genes involved in cell wall integrity signalling in Arabidopsis dark-grown hypocotyls
#PubMed:17540573 | Arabidopsis thaliana | whole plant | Arrays | Transcriptome Analysis of prc1 or the1 and prc1_the1 | gene knock out | 8 |
| RA05-06_LIF | LIF: Comparisons of transcritomic profils betweeen related mutants. #PubMed:21304947 | Arabidopsis thaliana | aerial | Arrays | LIF | gene knock in (transgenic),organ comparison | 32 |
| RA05-07_Stifenia | Effects of Stifenia pretreatment on Arabidopsis thaliana resistance against Fusarium oxysporum pv rafani | Arabidopsis thaliana | rosette | Arrays | Stifenia | treated vs untreated comparison | 8 |
| RA05-08_Seaweed | Seaweed extract impact on plant growth and nitrogen metabolism. | Arabidopsis thaliana | roots, rosette | Arrays | Seaweed extract and hydroponically grown Arabidopsis plants | treated vs untreated comparison | 12 |
| RA05-09_Urea | Urea impact on the nitrogen metabolism of plant and on the nitrogen transport systems #PubMed:18508958 | Arabidopsis thaliana | roots, rosette | Arrays | Urea | treated vs untreated comparison | 12 |
| RA05-10_NRT2.7 | atnrt2.7 v and atnrt2.7 s in a low and high nitrogen regime. | Arabidopsis thaliana | aerial, roots | Arrays | atnrt2.7 | gene knock out | 16 |
| RA05-11_CMSRapeseed | Comparing nuclear gene expression in two CMS-systems using microarray technology | Brassica napus | flower | Arrays | CMS4:19 and At Chr3 | wt vs mutant comparison | 16 |
| RA05-11_CMSRapeseed | Comparing nuclear gene expression in two CMS-systems using microarray technology | Brassica napus | flower | Arrays | RfPPR | wt vs mutant comparison | 6 |
| RA05-12_NAR2 | Atnar2.1-1 response to transfer on low nitrate condition | Arabidopsis thaliana | aerial, roots | Arrays | atnar2.1-1 | dose response,gene knock out | 16 |
| RA06-02_StayGreen | Eskimo gene characterisation. #PubMed:19061521 | Arabidopsis thaliana | rosette | Arrays | Drought and salt stress response | gene knock out,treated vs untreated comparison | 14 |
| RA06-03_DspA-Erwinia | Regulation of the Arabidopsis transcriptome by the type three effector DspA/E of Erwinia amylovora. | Arabidopsis thaliana | rosette | Arrays | DspA/E of Erwinia amylovora | wt vs mutant comparison | 10 |
| RA06-04_BOS1 | BOS1 signaling pathway in Arabidopsis thaliana / Erwinia chrysanthemi interaction | Arabidopsis thaliana | aerial | Arrays | Erwinia chrysanthemi treatments | normal vs disease comparison | 21 |
| RA06-05_Potyvirus-Ecot... | Transcriptionnal response to potyviruses infection in Arabidopsis | Arabidopsis thaliana | rosette | Arrays | Arabidopsis ecotypes | normal vs disease comparison | 12 |
| RA06-05_Potyvirus-Ecot... | Transcriptionnal response to potyviruses infection in Arabidopsis | Arabidopsis thaliana | rosette | Arrays | Potyvirus effect | normal vs disease comparison | 10 |
| RA07-01_PRX34 | Modifications of transcriptome in primary floral stem of Arabidopsis thaliana deregulated for a peroxydase involved in the lignification. | Arabidopsis thaliana | stem | Arrays | Primary Floral Stem 40cm | normal vs transgenic comparaison | 3 |
| RA07-01_PRX34 | Modifications of transcriptome in primary floral stem of Arabidopsis thaliana deregulated for a peroxydase involved in the lignification. | Arabidopsis thaliana | stem | Arrays | Primary Floral Stem 20cm | normal vs transgenic comparaison | 6 |
| RA07-02_ABA2 | Analysis of the role of maternal and embryonic ABA in seeds. | Arabidopsis thaliana | seed | Arrays | Maternal/embryonic ABA-1 | gene knock out,treated vs untreated comparison | 8 |
| RA07-03_ABA4 | Analyse of arabidopsis mutants and transforming affected in the synthesis of abscissic acid. | Arabidopsis thaliana | aerial | Arrays | ABA4/1 | gene knock in (transgenic),gene knock out | 8 |
| RA07-05_MYB82 | Fonctionnal caracterization of the transcription factor VvMYB82 | Arabidopsis thaliana | flower | Arrays | fonctional caracterization of VvMYB82 | wt vs mutant comparison | 4 |
| RA08-01_CPL1 | Transcriptome analysis of fry2 mutants. | Arabidopsis thaliana | whole plant | Arrays | Transcriptome analysis of fry2 mutants | gene knock out | 8 |
| RA08-02_Clavata-Ralsto... | Studies of two mutants for clavata genes | Arabidopsis thaliana | whole plant | Arrays | Clavata-Ralstonia | wt vs mutant comparison | 12 |
| RA08-03_Kim | Differential expression in laccase mutants of Arabidopsis thaliana | Arabidopsis thaliana | stem | Arrays | Laccases | wt vs mutant comparison | 11 |
| RA09-01_QTLleafgrowth | Studying the transcriptional consequences of a QTL for shoot growth (SG3, SG1).
Studying the transcriptional consequences of a QTL for shoot growth under mannitol condition (EGO3). #PubMed:24479634 | Arabidopsis thaliana | aerial | Arrays | EGO3 | genotype comparaison | 4 |
| RA09-01_QTLleafgrowth | Studying the transcriptional consequences of a QTL for shoot growth (SG3, SG1). Studying the transcriptional consequences of a QTL for shoot growth under mannitol condition (EGO3). | Arabidopsis thaliana | aerial | Arrays | SG1-SG3 | genotype comparaison | 8 |
| RA09-02_TCTP | Transcriptomic analyses approach to identify genes associated with organ growth downstream TCTP in Arabidopsis | Arabidopsis thaliana | rosette | Arrays | Over Expression | gene knock in (transgenic) | 4 |
| RA09-02_TCTP | Transcriptomic analyses approach to identify genes associated with organ growth downstream TCTP in Arabidopsis | Arabidopsis thaliana | rosette | Arrays | RNAi | normal vs rnai mutant comparaison | 4 |
| RA09-02_TCTP | Transcriptomic analyses approach to identify genes associated with organ growth downstream TCTP in Arabidopsis | Arabidopsis thaliana | rosette | Arrays | knockout | gene knock out | 4 |
| RA09-03_SGS | Transcriptome analysis of mutants impaired in post-transcriptional gene silencing (PTGS). | Arabidopsis thaliana | aerial | Arrays | mutants versus wt | gene knock in (transgenic) | 16 |
| RA10-01_Laccases | Differential expression in laccase mutants of Arabidopsis thaliana #PubMed:21447792 | Arabidopsis thaliana | stem | Arrays | Laccase mutations | normal vs knock out comparison | 12 |
| RA10-02_Viromouv | Analysis of the genic expression modifications of Arabidopsis Companion cells infected by plants viruses | Arabidopsis thaliana | protoplast,rosette | Arrays | Viromouv | normal vs disease comparison | 12 |
| RA10-03_Eliciteur | Effect of oligosaccharide treatments on gene expression. | Arabidopsis thaliana | rosette | Arrays | Oligosaccharide treatment - 24 hpt | treated vs untreated comparison | 36 |
| RA10-04_Roots | Root molecular responses of nitrate transporter mutants | Arabidopsis thaliana | roots | Arrays | WS vs Clca2/35A2/352.7 | gene knock out,genotype comparaison,normal vs transgenic comparaison | 16 |
| RA11-01_prgh | Transcriptomic analysis of Arabidopsis genes after treatment with Salmonella 14028s and Salmonella type three secretion system (T3SS) mutant prgh #PubMed:24198231 | Arabidopsis thaliana | whole plant | Arrays | comparison between Salmonella Wild type 14028s and Salmonella mutant prgh in Arabidopsis infection. | time course,treated vs untreated comparison | 30 |
| RA11-04_QTL | Functional characterization of Shoot Growth 1 (Sg1) | Arabidopsis thaliana | whole plant | Arrays | Study of the transcriptional consequences of a growth QTL candidate (Sg1) | gene knock out | 6 |
| RA12-01_mut_flg | FLG-OoPTIMICE | Arabidopsis thaliana | rosette | Arrays | INRA12-01_mut-flg | gene knock in (transgenic) | 30 |
| RA12-03_Raptor-NaCl | Response to salt stress of Raptor mutants | Arabidopsis thaliana | whole plant | Arrays | Response to salt stress of Raptor mutants | gene knock out,treated vs untreated comparison | 6 |
| RA12-05_mut_flg_II | FLG-MPKs #PubMed:24980080 | Arabidopsis thaliana | whole plant | Arrays | INRA12-05_mut_flg_II | gene knock out,normal vs mutant comparison,treated vs untreated comparison | 24 |
| RA12-06_myb118 | Identification of genes misregulated in developing seeds of Arabidopsis in response to the myb118 mutation. #PubMed:25194028 | Arabidopsis thaliana | seed | Arrays | myb118 mutation | normal vs transgenic comparaison | 8 |
| RA14-02_mkk3-ABA | MKK3-ABA | Arabidopsis thaliana | seedling | Arrays | Identification of the miss-regulated genes in mkk3 under ABA treatment. | gene knock out,treated vs untreated comparison | 12 |
| RA14-04_nced | ABA signaling in Arabidopsis seeds #PubMed:30948555 | Arabidopsis thaliana | seed | Arrays | ABAseed | gene knock out,genomic comparison | 9 |
| RA14-05_Multipass | MULTIPASS #PubMed:30373239 | Arabidopsis thaliana | aerial,rosette | Arrays | Effect of N nutrition of Arabidopsis response to Erwinia infection | normal vs disease comparison,treated vs untreated comparison | 8 |
| RA15-01_MYB92 | Identification of genes misregulated in developing seeds of Arabidopsis in response to the myb92 mutation and to MYB92 overexpression. | Arabidopsis thaliana | seed | Arrays | Identification of genes misregulated to myb92 mutant and MYB92 OE. | gene knock in (transgenic),gene knock out,normal vs transgenic comparaison | 6 |
| RA15-03_OXPMT7-7 | Impact of Brachypodium acyl-transferases. | Arabidopsis thaliana | stem | Arrays | Acyltransferase Brachypodium-Arabidopsis | normal vs transgenic comparaison | 6 |
| RA15-04_ELIM1 | Identification of genes differentiallty expressed in mur1 basal stems #PubMed:28961242 | Arabidopsis thaliana | stem | Arrays | transcription of ectopic lignification | genotype comparaison | 6 |
| RA15-06_OXMYC4 | AtMYC4 overexpression in Arabidopsis (ws) | Arabidopsis thaliana | stem | Arrays | AtMYC4 overexpression in Arabidopsis (ws) | normal vs transgenic comparaison | 6 |
| RA15-07_BurxCol_465 | RA15-07_BurxCol_465 | Arabidopsis thaliana | caulin leaf | Arrays | BurxCol-465 | gene knock out | 4 |
| RA16-01_MKK3_wounding | Identification of MKK3-dependent wonding-induced genes | Arabidopsis thaliana | aerial | Arrays | Identification of MKK3-dependent wonding-induced genes | gene knock out,genotype comparaison,normal vs transgenic comparaison,treated vs untreated comparison | 12 |
| RA16-03_ROTENONE | Effect of the inhibition of the mitochondrial respiratory chain complex I (CI) on shoot initiation on protoplast-derived calli | Arabidopsis thaliana | cell culture/primary cell | Arrays | Rotenone_Complex I mutants | gene knock out,genotype and ecotype comparison,time course | 12 |
| RA16-03_ROTENONE | Effect of the inhibition of the mitochondrial respiratory chain complex I (CI) on shoot initiation on protoplast-derived calli | Arabidopsis thaliana | callus | Arrays | Rotenone | time course,treated vs untreated comparison | 18 |
| RA16-04_3WD40 | Gene disruption in a triple WD40 mutant. | Arabidopsis thaliana | stem | Arrays | Stem transcriptome in a triple WD40 mutant. | genotype comparaison | 4 |
| RS03-01_Onc6b | Transcriptome alterations by the 6b oncogene of Agrobacterium | Arabidopsis thaliana | rosette | Arrays | Dex-GVG | gene knock in (transgenic) | 2 |
| RS03-01_Onc6b | Transcriptome alterations by the 6b oncogene of Agrobacterium | Arabidopsis thaliana | rosette | Arrays | Oncogene_effect | gene knock in (transgenic) | 6 |
| RS03-02_Phospholipases | Identification of genes induced with the cold via the ways of indication of the phospholipases C and D. #PubMed:16258011 | Arabidopsis thaliana | cell culture/primary cell | Arrays | Phospholipases 22°C | treated vs untreated comparison | 15 |
| RS03-02_Phospholipases | Identification of genes induced with the cold via the ways of indication of the phospholipases C and D. | Arabidopsis thaliana | cell culture/primary cell | Arrays | Phospholipases 4°C | treated vs untreated comparison | 18 |
| RS04-01_CytC | The cytochrome pathway and cytochrome C biogenesis | Arabidopsis thaliana | rosette | Arrays | CCME | gene knock in (transgenic) | 5 |
| RS04-01_CytC | The cytochrome pathway and cytochrome C biogenesis | Arabidopsis thaliana | cell culture/primary cell | Arrays | Antimycine A | treated vs untreated comparison | 5 |
| RS04-02_NTR | Transcriptomic study of a thioredoxin reductase knock-out mutant. #PubMed:19825611 | Arabidopsis thaliana | whole plant | Arrays | NTR | gene knock out,wt vs mutant comparison | 6 |
| RS04-04_SKP2_CUL4 | Functional analysis of the SKP2 and CUL4 proteins | Arabidopsis thaliana | whole plant | Arrays | comparison_Cul4_As_dark_light | gene knock out,normal vs antisens mutant comparison | 12 |
| RS04-04_SKP2_CUL4 | Functional analysis of the SKP2 and CUL4 proteins | Arabidopsis thaliana | whole plant | Arrays | comparison_Cul4_As_light | gene knock out,normal vs antisens mutant comparison | 9 |
| RS04-04_SKP2_CUL4 | Functional analysis of the SKP2 and CUL4 proteins | Arabidopsis thaliana | cotyledons | Arrays | comparison_Col0vsSKP2 | wt vs mutant comparison | 6 |
| RS04-05_Nickel | Effect of nicotianamine over-accumulation in standard condition and in response to nickel treatment | Arabidopsis thaliana | aerial | Arrays | Nickel_Leaf | gene knock in (transgenic),organ comparison | 2 |
| RS04-05_Nickel | Effect of nicotianamine over-accumulation in standard condition and in response to nickel treatment | Arabidopsis thaliana | roots | Arrays | Nickel_Root | gene knock in (transgenic) | 4 |
| RS04-06_CDT1 | Characterization of the AtCDT1a and AtCDT1b by RNAi | Arabidopsis thaliana | aerial | Arrays | CDT1 | normal vs rnai mutant comparaison | 4 |
| RS04-07_Set-1 | Functional analysis of protein SET in Arabidopsis #PubMed:17122067 | Arabidopsis thaliana | whole plant | Arrays | Comparison WT-set mutants | normal vs rnai mutant comparaison | 8 |
| RS04-08_NtKis | CKI role in plant development | Arabidopsis thaliana | whole plant | Arrays | Nt-Kis | gene knock in (transgenic) | 4 |
| RS04-09_hahb4 | Identification of targets of the transcription factor hahb-4 in relation to abiotic stress #PubMed:16972869 | Arabidopsis thaliana | aerial | Arrays | Water stress | gene knock in (transgenic),treated vs untreated comparison | 8 |
| RS04-10_Oxydative--str... | Involvement of small non coding RNAs in Arabidopsis responses to oxidative stress | Arabidopsis thaliana | cell culture/primary cell | Arrays | time course H2O2 traitement | treated vs untreated comparison | 8 |
| RS05-04_salicylic-acid | Role of phosphatidylinositol 4-kinase #PubMed:17496105 | Arabidopsis thaliana | cell culture/primary cell | Arrays | Modification of response to salicylic acid by wortmannin treatment | dose response,treated vs untreated comparison | 42 |
| RS05-05_Atrazine | Sucrose effects on xenobiotic tolerance in Arabidopsis thaliana, a CATMA study.
Transcriptomic analysis of sucrose effects on xenobiotic tolerance in Arabidopsis thaliana.
#PubMed:18053238 | Arabidopsis thaliana | whole plant | Arrays | Effect of atrazine and sucrose on Arabidopsis transcriptome | treated vs untreated comparison | 12 |
| RS05-06_DGPP | DGPP regulated genes. Identification of diacylglycerol pyrophosphate regulated genes in ABA signaling. | Arabidopsis thaliana | cell culture/primary cell | Arrays | DGPP - 2 | treated vs untreated comparison | 8 |
| RS05-06_DGPP | DGPP regulated genes. Identification of diacylglycerol pyrophosphate regulated genes in ABA signaling. | Arabidopsis thaliana | cell culture/primary cell | Arrays | DGPP | treated vs untreated comparison | 18 |
| RS05-07_Nucleolin | Characterization of a nucleolin gene in Arabidopsis thaliana mutant line | Arabidopsis thaliana | whole plant | Arrays | Analysis of Atnuc-L1 mutant line | gene knock out | 4 |
| RS05-08_NO | Transcriptionnal impact of Cd-induced nitric oxide synthesis. #PubMed:19168643 | Arabidopsis thaliana | roots | Arrays | NO | treated vs untreated comparison | 15 |
| RS05-09_Histone-acetyl... | Studies of the gene expression profil in the simple mutants gcn5 and hd1 and in the double mutant gcn5 hd1. #PubMed:18644002 | Arabidopsis thaliana | aerial | Arrays | GCN5 | gene knock out | 4 |
| RS05-09_Histone-acetyl... | Studies of the gene expression profil in the simple mutants gcn5 and hd1 and in the double mutant gcn5 hd1. | Arabidopsis thaliana | aerial | Arrays | GCN5_2 | gene knock in (transgenic) | 3 |
| RS05-10_AtrazineII | Sucrose effects on xenobiotic tolerance in Arabidopsis thaliana, a CATMA study.Temporal analysis of sucrose effects on atrazine tolerance in Arabidopsis thaliana. #PubMed:18053238 | Arabidopsis thaliana | whole plant | Arrays | Time course analysis of atrazine and sucrose effects | time course,treated vs untreated comparison | 21 |
| RS05-11_Hypocotyls | Plant cell wall and development. Comparison of transcript levels between elongating (5 day-old) and elongated (11 day-old) etiolated hypocotyls. #PubMed:19878582 | Arabidopsis thaliana | hypocotyl | Arrays | Hypocotyls | organ comparison | 6 |
| RS05-12_SetII | Functional characterization of Arabidopsis NAP1/SET genes #PubMed:18070919 | Arabidopsis thaliana | whole plant | Arrays | all comparison | gene knock out | 15 |
| RS05-12_SetII | Functional characterization of Arabidopsis NAP1/SET genes | Arabidopsis thaliana | whole plant | Arrays | sdg25 and sdg26 | gene knock out | 9 |
| RS05-13_Hag4 | Homeostasie of histone acetylation and the control of transcription. | Arabidopsis thaliana | roots | Arrays | Transcriptome of hag4 root | gene knock out | 6 |
| RS05-14_VDAC1 | Functions of AtVDAC1 and its partner p26 in Arabidopsis thaliana. Identification of genes involved in AtVDAC1 signalling pathway in response to salicylic acid. | Arabidopsis thaliana | whole plant | Arrays | vdac1-p26 | gene knock out,treated vs untreated comparison | 8 |
| RS05-15_Iron_signaling | Responses to iron excess in plants: identification of genes involved in iron homeostasis | Arabidopsis thaliana | cell culture/primary cell | Arrays | RS05-15_Iron | time course | 7 |
| RS05-16_KdoT | Analysis of an Arabidopsis Kdo transferase mutant | Arabidopsis thaliana | aerial | Arrays | Analysis of an Arabidopsis Kdo transferase mutant | gene knock out | 2 |
| RS06-01_PLD | Fonctional analysis of the double mutant phospholipasezeta1,2 in response to abiotic stress | Arabidopsis thaliana | whole plant | Arrays | PLD | gene knock out,treated vs untreated comparison | 48 |
| RS06-03_Cd-miRNA | cadmium stress on suspension cells. | Arabidopsis thaliana | cell culture/primary cell | Arrays | Cadmium-miRNA | treated vs untreated comparison | 8 |
| RS06-04_wat1-1 | Transcriptomic analyses of the wat1-1 nodulin-like knock out mutant #PubMed:20497379 | Arabidopsis thaliana | seedling, stem | Arrays | wat1-1 | gene knock out,organ comparison | 8 |
| RS06-05_Arabinofuranos... | Comparative analysis of mutant and overexpressor of the At3g10740 gene, alpha-L-arabinofuranosidase #PubMed:18344421 | Arabidopsis thaliana | stem | Arrays | Mutant vs WT | gene knock out | 2 |
| RS06-05_Arabinofuranos... | Comparative analysis of mutant and overexpressor of the At3g10740 gene, alpha-L-arabinofuranosidase | Arabidopsis thaliana | stem | Arrays | Overexpressor vs WT | gene knock in (transgenic) | 2 |
| RS06-06_miRNA | Gene profiling upon biotic stress treatment.
Gene profiling in microRNA mutants.
Gene profiling in siRNA mutants. #PubMed:19802597 | Arabidopsis thaliana | seedling | Arrays | Comparisons Wt-mutants 1 and 3 | gene knock out | 8 |
| RS06-06_miRNA | Gene profiling upon biotic stress treatment. Gene profiling in microRNA mutants. Gene profiling in siRNA mutants. | Arabidopsis thaliana | seedling | Arrays | Flg22 time course | time course,treated vs untreated comparison | 20 |
| RS06-06_miRNA | Gene profiling upon biotic stress treatment. Gene profiling in microRNA mutants. Gene profiling in siRNA mutants. | Arabidopsis thaliana | whole plant | Arrays | Flg22 treatment & mutants 2 | treated vs untreated comparison | 12 |
| RS06-06_miRNA | Gene profiling upon biotic stress treatment. Gene profiling in microRNA mutants. Gene profiling in siRNA mutants. | Arabidopsis thaliana | seedling | Arrays | Flg22 treatment & mutants | time course,total transcriptome knowledge | 28 |
| RS06-06_miRNA | Gene profiling upon biotic stress treatment. Gene profiling in microRNA mutants. Gene profiling in siRNA mutants. | Arabidopsis thaliana | seedling | Arrays | Comparisons Wt-mutants 2 | gene knock out | 8 |
| RS06-06_miRNA | Gene profiling upon biotic stress treatment. Gene profiling in microRNA mutants. Gene profiling in siRNA mutants. | Arabidopsis thaliana | seedling | Arrays | Flagellin experiment in dcl2-dcl3-dcl4 mutant background | treated vs untreated comparison | 12 |
| RS06-06_miRNA | Gene profiling upon biotic stress treatment. Gene profiling in microRNA mutants. Gene profiling in siRNA mutants. | Arabidopsis thaliana | seed, stem | Arrays | Agrobacterium treatment | normal vs disease comparison,organ comparison | 6 |
| RS06-06_miRNA | Gene profiling upon biotic stress treatment. Gene profiling in microRNA mutants. Gene profiling in siRNA mutants. | Arabidopsis thaliana | seedling | Arrays | Comparisons Wt-mutants 1 | gene knock out | 6 |
| RS06-06-miRNA_CaMV_tre... | Gene profiling durinig CaMV infection. | Arabidopsis thaliana | rosette | Arrays | CaMV treatment | gene knock out,normal vs disease comparison | 7 |
| RS06-07_DELLA | DELLAs contribute to salt stress responses #PubMed:18450450 | Arabidopsis thaliana | seedling | Arrays | DELLA-regulation of salt stress responses | dose response,gene knock out,time course | 18 |
| RS07-01_carnitine | Effect of carnitine on the transcriptome of A. thaliana #PubMed:21853252 | Arabidopsis thaliana | seedling | Arrays | carnitine effect | treated vs untreated comparison | 12 |
| RS07-01_carnitine | Effect of carnitine on the transcriptome of A. thaliana | Arabidopsis thaliana | seedling | Arrays | Treatment g-butyrobetaine WT Col.0 | treated vs untreated comparison | 4 |
| RS07-02_npc48 | Analysis of npc48 overexpressing plants. | Arabidopsis thaliana | rosette | Arrays | Analysis of npc48 overexpressing plants | gene knock in (transgenic) | 6 |
| RS07-03_APC | Transcriptome on Arabidopsis APC hypomorphic lines | Arabidopsis thaliana | whole plant | Arrays | APC Transcriptome | normal vs rnai mutant comparaison | 6 |
| RS07-04_MIPS | Cell cycle and cell death interaction in plants : PCNA, AtXRs and AtMIPS pathway. #PubMed:19812700 | Arabidopsis thaliana | rosette | Arrays | AtMIPS mutant/photoperiod | gene knock out | 8 |
| RS07-05_sphingolipids-... | Identification of Sphingolipid regulated genes in cold stress response. Sphingolipids regulated genes. | Arabidopsis thaliana | cell culture/primary cell | Arrays | Sphingo-1 | treated vs untreated comparison | 24 |
| RS07-06_PLC_cold_plant | The effect of PLC inhibitor on cold responsive transcriptome. | Arabidopsis thaliana | whole plant | Arrays | PLC_cold_plant | treated vs untreated comparison | 4 |
| RS07-07_lpp2 | Gene expression of lpp2 KO mutant in response to ABA. | Arabidopsis thaliana | rosette | Arrays | ABA-treated lpp2 mutant | treated vs untreated comparison | 8 |
| RS07-08_Gollum | Role of the Gollum gene in the plant development #PubMed:23639116 | Arabidopsis thaliana | caulin leaf, rosette | Arrays | Trancript profiling in Arabidopsis GOLLUM mutant. | wt vs mutant comparison | 6 |
| RS07-09_BOU | bou mutant characterisation.
Autotrophic growth acquisition in the ABOUTDESOUFFLE (bou) mutant. #PubMed:23181524 | Arabidopsis thaliana | whole plant | Arrays | CATMA1-bou | gene knock in (transgenic),normal vs disease comparison,time course | 10 |
| RS08-01_Met2 | Involvement of non coding RNAs in the adaptation of root architecture to abiotic stress | Arabidopsis thaliana | aerial, roots | Arrays | comparative analysis of CATMA chips with a MET2 overexpression line | organ comparison,wt vs mutant comparison | 8 |
| RS08-02_Nad | Analysis of the effect of NAD concentration on the transcriptome. | Arabidopsis thaliana | rosette | Arrays | Dark and Light | treated vs untreated comparison | 12 |
| RS08-03_Glutathion | Interactions between H2O2 and glutathion in gene expression. #PubMed:20488891 | Arabidopsis thaliana | rosette | Arrays | Glutathion | gene knock out | 24 |
| RS08-04_wat1-Ralstonia | Caracterisation of wat1 mutant | Arabidopsis thaliana | roots, rosette | Arrays | mutant comparison | wt vs mutant comparison | 12 |
| RS08-04_wat1-Ralstonia | Caracterisation of wat1 mutant | Arabidopsis thaliana | roots, rosette | Arrays | Ralstonia infection | treated vs untreated comparison | 40 |
| RS08-05_BAC2 | bac2 mutant transcriptome modification during osmotic stress | Arabidopsis thaliana | rosette | Arrays | BAC2-CATMA | gene knock out,treated vs untreated comparison,wt vs mutant comparison | 8 |
| RS09-01_Det1 | Expression profile of DET1-1 mutant during photomorphogenesis | Arabidopsis thaliana | seedling | Arrays | photomorphogenesis | treatment variations | 10 |
| RS09-02_Quinolinate | Deregulation of NAD biosynthesis #PubMed:22268572 | Arabidopsis thaliana | rosette | Arrays | Quinolinate | treated vs untreated comparison,wt vs mutant comparison | 8 |
| RS09-03_ZF1 | None | Arabidopsis thaliana | rosette | Arrays | ZF1 experiment | normal vs transgenic comparaison | 6 |
| RS09-04_PLC_2 | PI4-kinase and phospholipase C signaling in cold response #PubMed:23964284 | Arabidopsis thaliana | cell culture/primary cell | Arrays | Edelfosine and wortmannin effect at 22°C and 4°C | treated vs untreated comparison | 13 |
| RS09-06_Silencing-Munt... | Transcriptome analysis of silencing mutants and endogenous hairpin KO insertion. | Arabidopsis thaliana | seedling | Arrays | Silencing Mutants | genotype comparaison | 13 |
| RS09-07_HB6 | Role of HB6 in plant development | Arabidopsis thaliana | seedling | Arrays | HB6 | wt vs mutant comparison | 9 |
| RS09-08_FIE | Dissecting the role of the polycomb repressory complex in Arabidopsis: Characterisation of PRC2 mutant #PubMed:21423668 | Arabidopsis thaliana | whole plant | Arrays | upregulation of transcripts in the absence of PRC2 repressory complex | gene knock out | 10 |
| RS09-09_DELLA-dark | DELLAs contribute to skotomorphogenesis #PubMed:21571951 | Arabidopsis thaliana | whole plant | Arrays | DELLA-regulation in darkness versus light | gene knock out | 15 |
| RS09-10_FWA | DNA methylation and small RNAs | Arabidopsis thaliana | rosette, seedling | Arrays | wt vs mutants 09 | fwa-d,gain of fuction epimutation,gene knock in (transgenic),gene knock out | 14 |
| RS09-10_FWA | DNA methylation and small RNAs | Arabidopsis thaliana | seedling | Arrays | oct07 | gene knock out | 8 |
| RS10-01_RRM | Transcriptomic study of a quadruple rrm mutant which belong to a new family of AGO hook proteins at Arabidopsis thaliana | Arabidopsis thaliana | rosette | Arrays | Quadruple RRM experience | normal vs transgenic comparaison | 4 |
| RS10-02_ros_dme | Genetic dissection of endosperm development #PubMed:21423668 | Arabidopsis thaliana | seed | Arrays | Genes regulated by ROS and DME | gene knock out | 8 |
| RS10-03_IND | Transcriptome profiling upon induction of the transcription factor IND | Arabidopsis thaliana | seedling | Arrays | Comparison of IND induced vs mock treated seedlings | induced vs non-induced comparison | 6 |
| RS10-04_MAD | Transcriptome analysis of miRNA action deficient mutants | Arabidopsis thaliana | seedling | Arrays | Comparison of transcriptomes in mad mutants | genotype comparaison | 12 |
| RS10-05_TCV | Gene profiling of Turnip Crinkle Virus (TCV) siRNA in A.thaliana | Arabidopsis thaliana | rosette | Arrays | Gene profiling of Turnip Crinkle Virus (TCV) siRNA | gene knock out,treated vs untreated comparison | 21 |
| RS10-06_CDKA | cdka mutants | Arabidopsis thaliana | aerial | Arrays | cdka mutants | wt vs mutant comparison | 12 |
| RS11-01_NAD | NAD biosynthesis in Arabidopsis : role of quinolinate phosphoribosyltransferase | Arabidopsis thaliana | rosette | Arrays | Knock Out Mutant N575260 | gene knock out | 4 |
| RS11-02_Opine | Impact of genetically modified plants on bacteria from rhizosphere | Arabidopsis thaliana | whole plant | Arrays | Septante project | normal vs transgenic comparaison | 9 |
| RS11-03_Agro | Quorum-sensing in Agrobacterium-induced tumors #PubMed:26714842 | Arabidopsis thaliana | stem | Arrays | Transcriptomic comparison of tumoric tissues induced by different C58 Agrobacterium lines | infected vs non infected tissue comparison | 21 |
| RS11-07_Opine2 | Septante2 | Arabidopsis thaliana | stem | Arrays | Septante soil | normal vs transgenic comparaison | 9 |
| RS11-08_NAD2 | Regulation of NAD biosynthesis in Arabidopsis : role of quinolinate phosphoribosyltransferase. | Arabidopsis thaliana | rosette | Arrays | Down regulation of QPTgene in Arabidopsis | normal vs transgenic comparaison | 4 |
| RS11-09_Meotic | Time course of meiotic gene expression in Arabidopsis | Arabidopsis thaliana | aerial | Arrays | Time course expression profile of ap1-cal after induction of an AP1-transgene | time course | 15 |
| RS11-10_URT1 | Transcriptome comparison between WT and a mutant impaired in RNA uridylation. | Arabidopsis thaliana | rosette | Arrays | Leaf transcriptome comparison between wt and URT1 (SALK_087647) | gene knock out | 6 |
| RS11-11_Myb52 | Transcriptome analysis of atmyb52 mutant vs wild-type | Arabidopsis thaliana | stem | Arrays | MYB52-2 T-DNA | normal vs transgenic comparaison | 4 |
| RS12-03_Complex-I | Analysis of complex I mutants | Arabidopsis thaliana | seedling | Arrays | Complex I | gene knock out | 15 |
| RS12-04_RNAnonPolyA | ANR MITOMANIP #PubMed:31200566 | Arabidopsis thaliana | whole plant | Arrays | nad9 knockdown 1 | trans-ribozyme-mediated knockdown of a specific mitochondrial rna | 4 |
| RS12-06_A9-MrNonPolyA | ANR MITOMANIP | Arabidopsis thaliana, Cephalanthera damasonium | whole plant | Arrays | matR knockdown 1 | trans-ribozyme-mediated knockdown of a specific mitochondrial rna | 12 |
| RS12-07_PNM1 | CNRS12-07_PNM1 | Arabidopsis thaliana | rosette | Arrays | Leaf transcriptome comparison between wt and PNM1DNLS plants | normal vs transgenic comparaison | 4 |
| RS12-08_cyp715A1 | Genome-wide transcriptional analysis of cyp715A1 #PubMed:26388305 | Arabidopsis thaliana | flower bud | Arrays | Col-0 vs cyp715A1 | gene knock out,genotype comparaison | 6 |
| RS13_01_LAO | Down/up regulation of NAD biosynthesis in Arabidopsis : role of L-Aspartate oxidase | Arabidopsis thaliana | rosette | Arrays | Down/up regulation of NAD biosynthesis in Arabidopsis and role of L-Aspartate oxidase | genotype comparaison | 8 |
| RS13-02_Mitomanip | ANR MITOMANIP #PubMed:31200566 | Arabidopsis thaliana | whole plant | Arrays | Mitomanip microarray experiment 4 | time course,trans-ribozyme-mediated knockdown of a specific mitochondrial rna vs control | 30 |
| RS14-01_Mitomanip2 | ANR MITOMANIP | Arabidopsis thaliana | whole plant | Arrays | Microarray experiment 4 | time course | 20 |
| TIL-Ath-2011_3 | HEN2 is a cofactor of the nuclear exosome in Arabidopsis #PubMed:25144737 | Arabidopsis thaliana | whole plant | Arrays | tiling hen2 and mtr4 | gene knock out,genotype comparaison,normal vs transgenic comparaison | 6 |
| TRI33-LEC1 | Establishing the network of seed gene expression and analysis of its biodiversity #PubMed:22429691 | Arabidopsis thaliana | whole plant | Arrays | WT Dex Induction | treated vs untreated comparison | 6 |
| TRI33-LEC1 | Establishing the network of seed gene expression and analysis of its biodiversity | Arabidopsis thaliana | whole plant | Arrays | LEC1::GR Induction | treated vs untreated comparison | 8 |
| TRI38-LAR | Transcriptomic analysis of the localized acquired resistance phenomenon (LAR) in Arabidopsis Thaliana. | Arabidopsis thaliana | rosette | Arrays | LAR | normal vs disease comparison | 6 |
| TRI38-LAR | Transcriptomic analysis of the localized acquired resistance phenomenon (LAR) in Arabidopsis Thaliana. | Arabidopsis thaliana | rosette | Arrays | HR | normal vs disease comparison | 2 | Project | Title | Organism | Organs/Tissues | Technology | Experiment Name | Experiment Type | Nb Samples |
| Project | Title | Organism | Organs/Tissues | Technology | Experiment Name | Experiment Type | Nb Samples |
|---|---|---|---|---|---|---|---|
| AAP_BAP_NitroPath_2014 | Nitrogen nutrition and pathogen susceptibility: priming by metabolism. #PubMed:32939948 | Arabidopsis thaliana | rosette | RNA-Seq | BotrytisxN | normal vs disease comparison | 32 |
| CAT-seq | Comparative Arabidopsis Transcriptome -Sequencing #PubMed:27742662 | Arabidopsis thaliana | aerial, flower bud | RNA-Seq | RNA-Seq part | organ comparison | 4 |
| JC2013_SYBIOPOP_2014 | Sybiopop: A systems biology approach to improve poplar biorefinery feedstock by deciphering the genetic architecture of lignocellulosic biomass production and quality #PubMed:30541448, 32571208 | Populus nigra | cambium,xylem | RNA-Seq | Validation of pilot transcriptomic study | genotype and ecotype comparison | 24 |
| JC2013_SYBIOPOP_2014 | Sybiopop: A systems biology approach to improve poplar biorefinery feedstock by deciphering the genetic architecture of lignocellulosic biomass production and quality | Populus nigra | cambium,xylem | RNA-Seq | Large genotype and population comparisons in Populus nigra | genotype and ecotype comparison | 459 |
| JC2013_SYBIOPOP_2014 | Sybiopop: A systems biology approach to improve poplar biorefinery feedstock by deciphering the genetic architecture of lignocellulosic biomass production and quality | Populus nigra | cambium,xylem | RNA-Seq | Pilot transcriptomic study | genotype and ecotype comparison | 24 |
| NGS2012_02_MicroD | Dilution | Arabidopsis thaliana | seed | RNA-Seq | NGS micro D-2 | null | 6 |
| NGS2013_04_Nod | Transcriptomic response to Nod Factor treatments on Medicago | Medicago truncatula | roots | RNA-Seq | Transcriptomic analysis of Medicago root hairs | treated vs untreated comparison | 6 |
| NGS2013_07_Pcapsici | FFECAPS project: Phytophthora capsici Illumina RNAseq transcriptome of two isolates, one adapted to pepper, another non adapted, in two pepper accessions, one partially resistant and one susceptible to Phytophthora capsici | Capsicum annuum L. | stem | RNA-Seq | EFFECAPS-Phytophthora capsici | genotype comparison,treated vs untreated comparison | 24 |
| NGS2014_01_MicroD | None #PubMed:29434651 | Arabidopsis thaliana | seed | RNA-Seq | NGS micro D-1 | organ comparison | 8 |
| NGS2014_07_Hevea | RNAseq analysis of latex samples from healthy and Tapping Panel Dryness-affected trees. #PubMed:29855601 | Hevea brasiliensis | latex | RNA-Seq | Hevea_TPD-seq | genotype comparaison,normal vs disease comparison | 21 |
| NGS2014_10_Epsilon | Transcriptomic changes associated with DNA pol epsilon deficiency #PubMed:27193996 | Arabidopsis thaliana | seedling | RNA-Seq | Transcriptome deficient mutants for the epsilon DNA polymerase | normal vs transgenic comparaison | 12 |
| NGS2014_21_SeedCom | Seedcom #PubMed:32086366 | Zea mays | aleurone, embryo, embryo surrounding region, endosperm, pericarp, scutellum | RNA-Seq | RNA-seq Seedcom | organ comparison | 24 |
| NGS2014_39_LeafNet2 | Dynamic and specificity of CUP-SHAPED COTYLEDON transcription factors during leaf development #PubMed:35575098 | Arabidopsis thaliana | seedling | RNA-Seq | CUC2-identification | treated vs untreated comparison | 6 |
| NGS2015_01_Transition | Transcriptome of floral transition #PubMed:30971226 | Arabidopsis thaliana | rosette | RNA-Seq | Transition | time course | 12 |
| NGS2015_05_HIGH_TEMPER... | High temperature Arabidopsis root transcriptome #PubMed:28827608 | Arabidopsis thaliana | roots | RNA-Seq | High Temp WT | treated vs untreated comparison | 7 |
| NGS2015_12_ZeaWall2 | ZeaWall2 #PubMed:31891625 | Zea mays | internode | RNA-Seq | ZeaWall2 | allele,genomic comparison | 10 |
| NGS2015_19_ANR-JC-BRAV... | Brachypodium Vascular ontogeny #PubMed:33892630 | Brachypodium distachyon | meristem | RNA-Seq | Microdissection data of 3 vascular bundles stages | time course,tissue differentiation | 12 |
| NGS2016-07-ASCOncRNA | Splicing regulation by the lncRNA ASCO #PubMed:32285620 | Arabidopsis thaliana | seedling | RNA-Seq | Splicing regulation by the lncRNA ASCO | normal vs rnai mutant comparaison,normal vs transgenic comparaison | 9 |
| NGS2016_08_DYW2 | DYW2_OTP100 #PubMed:28760958 | Arabidopsis thaliana | flower bud,rosette,stem | RNA-Seq | DYW2 | gene knock out | 12 |
| NGS2016_10_Dormancy | Dormancy Release by phosphorylation #PubMed:31325184 | Arabidopsis thaliana | seed | RNA-Seq | RNA seq on mpk8 and tcp14 mutants on dry and imbibited seeds | gene knock out | 18 |
| NGS2017_08_Brasilice | Effect of silicon (Si) supply on lef and root transcriptomes #PubMed:30820649 | Brassica napus | aerial, roots | RNA-Seq | Transilice | treated vs untreated comparison | 12 |
| NGS2017_09_MOSS1 | The goal of this study is to identify genes whose expression is affected by decapitation and auxin in moss gametophores #PubMed:35841890 | Physcomitrella patens | stem | RNA-Seq | AUXIN_DECAPITUATION_2exp | treated vs untreated comparison | 24 |
| NGS2017_11_ROSEX2 | Project 1 : VeRo : Vernalisation Rose (Genetic and epigenetic control of flowering in Rosa Wichuraiana)
Project 2 : Sucre-Auxine_Rose #PubMed:33543244 | Rosa hybrida | flower bud | RNA-Seq | Auxin sugar antagonist effect on budburst | treated vs untreated comparison | 12 |
| NGS2017_11_ROSEX2 | Project 1 : VeRo : Vernalisation Rose (Genetic and epigenetic control of flowering in Rosa Wichuraiana) Project 2 : Sucre-Auxine_Rose | Rosa chinensis | flower bud | RNA-Seq | Cold Response | dose response,time course | 6 |
| NGS2017_12_DDM1 | Hypomethylation and drought stress on transcriptome #PubMed:34128549 | Populus tremula x Populus alba | shoot apex | RNA-Seq | NGS2017_12_DDM1 | normal vs rnai mutant comparaison | 6 |
| NGS2018_05_TOR | Analysis of Arabidopsis mutants TOR/LST8/MAKTOR #PubMed:31216485 | Arabidopsis thaliana | whole plant | RNA-Seq | Analysis of Arabidopsis mutants TOR/LST8/YAK1/MAKTOR | gene knock out | 18 |
| NGS2018_10_Ethylene | RNA-seq ± Ethylene #PubMed:33020928 | Arabidopsis thaliana | seed | RNA-Seq | effect of ethylene RNA-seq | treated vs untreated comparison | 21 |
| NGS2018_11_nlp2 | Study of the primary nitrate response (PNR) in nlp2 mutant and WT #PubMed:36752317 | Arabidopsis thaliana | seedling | RNA-Seq | No treatment / Nitrate starvation / Nitrate induction | normal vs mutant comparison,treated vs untreated comparison | 18 |
| NGS2019_18_Eplus | Eplus #PubMed:32098170 | Arabidopsis thaliana | leaf | RNA-Seq | Eplus | gene knock out | 12 |
| NGS2020_14_pi4kb1b2 | Study of pi4kb1b2 mutant | Arabidopsis thaliana | leaf, roots | RNA-Seq | Differential gene expression in seedlings of pi4kb1b2 | gene knock out,organ comparison | 12 |
| NGS2020_19_ARIMNet | Barley Stress Tolerance | Hordeum vulgare | aerial | RNA-Seq | Barley responses to nitrate limitation | dose response,genotype comparison | 18 |
| NGS2020_20_IDEAS | IDEAS project on nitrogen starvation #PubMed:37954572 | Arabidopsis thaliana | rosette | RNA-Seq | IDEAS | treated vs untreated comparison | 20 |
| NGS2020_24_ERA | Protein farnesylation is involved in the adaptation of Arabidopsis to nitrogen starvation | Arabidopsis thaliana | rosette | RNA-Seq | Nitrogen | dose response,genotype and ecotype comparison | 18 |
| NGS2021_03_Snap33 | Description of Arabidopsis thaliana t-SNARE SNAP33 #PubMed:38281242 | Arabidopsis thaliana | seedling,whole plant | RNA-Seq | RNA-seq snap33-1 vs WT | gene knock out,genotype comparison,time course | 12 |
| NGS2021_04_MAC | Transcriptome analysis of mutants in uncharacterised mitochondrial proteins #PubMed:37651534 | Arabidopsis thaliana | seedling | RNA-Seq | mTRAN | gene knock out | 6 | Project | Title | Organism | Organs/Tissues | Technology | Experiment Name | Experiment Type | Nb Samples |
Content description
CATdb is a large catalogue of transcriptomic experiments dedicated to gene expression studies in Plants.
Main features include:
♦ a complete description with sample species, genotype, organ/tissue and growth culture conditions;
♦ availability of raw (pre-processed) and computed data with DE gene lists or count tables;
♦ a same analysis pipeline made of bioinformatics and statistical methods adapted to tools and technology evolutions (μArrays and RNAseq);
Plant Stress transcriptome analysis
GEM2Net ... from Gene Expression Modeling To Networks in Plants
This project is a transcriptomic data meta-analysis of a series of CATdb's experiments that were designed to investigate biotic or abiotic stress in Arabidopsis thaliana.
In CATdb, selected experiments for GEM2Net are indicated by the clickable icon
Usefull links
♦ FTP Site to download all data files:
https://tools.ips2.u-psud.fr/ftp/CATdb
♦ When using CATdb data in
publications, please cite: Gagnot S., Tamby J.Ph. et al. 2008 Nucl. Ac. Res. 36: D986-90.
Full citation here...
♦ Contact us by e-mailing to
♦ Credits from IPS2:
Genomics Networks (GNet) team
Organellar Gene Expression (OGE) team
POPS Transcriptomic Platform
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