ProjectTitleOrganismOrgans/TissuesTechnologyExperiment NameExperiment TypeNb Samples
12PLEX_MED_2013_04Influence of Nod Factors on early developmental stages of root development in Medicago truncatula
#PubMed:28073951
Medicago truncatularootsArrays12PLEX_MED_2013_04treated vs untreated comparison 12
12plex_medicago-2012-0...12plex-medicago-2012-06_GENOPEA3.2
#PubMed:31440268
Medicago truncatulacaulin leaf, flower budArraysVegetative and reproductive leavestime course,treated vs untreated comparison 30
12plex_medicago_2014_0...analysis of symbiotic root nodule developmentMedicago sativanodule, rootsArraysNAR nodule vs root transcriptomeorgan comparison 8
12PLEX_PEA_2013_02Water stress and seed filling in pea Pisum sativumseedArrays12PLEX_PEA_2013_02_G treated vs untreated comparison 12
12PLEX_PEA_2013_02Water stress and seed filling in pea Pisum sativumcaulin leafArrays12PLEX_PEA_2013_02_Ftreated vs untreated comparison 12
12plex_poplar_2012-01Characterization of early molecular events of woody stem gravitropism independently of phototropic responsesPopulus tremula x Populus albastemArraysGravitropic stimulation / Isotropic lighttreated vs untreated comparison 16
12plex_vitis_2011-02Défistim Vitis viniferacaulin leafArrays12PLEX_VITIS_2011_02_48hnormal vs disease comparison 21
12plex_vitis_2011-02Défistim Vitis viniferacaulin leafArrays12PLEX_VITIS_2011_02_24hnormal vs disease comparison,treated vs untreated comparison 21
12PLEX_WHEAT_2012-05The wheat grain transcriptome response to high temperature
#PubMed:29940014
Triticum aestivumseedArrays12PLEX-WHEAT_2012-05genotype comparaison,treated vs untreated comparison 96
4plex_Brassica_2015_04Impact of atmospheric benzene on leaves of Brassica oleracea.Brassica oleraceaaerialArraysImpact of different doses of benzene on leaves of Brassica oleraceatreated vs untreated comparison 16
4plex_MAIZE_2015_02FUI GranoFlakes.
#PubMed:28450877
Zea maysseedArraysAlbumen Vitreux vs Albumen Farineuxtissue comparison 16
4plex_MAIZE_2015_02FUI GranoFlakes.Zea maysseedArraysCINETIQUE comparisontime course 16
4PLEX_PEA_2014_01Characterization of transcriptome changes in leaves of wild-type and mutant lines (for a sulfur transporter) subjected or not to sulfur deficiency during the reproductive phasePisum sativumcaulin leafArraysTranscriptome changes in pea leaves with sulfur deficency/sufficienty during reproductive phase.gene knock out,genotype comparaison,treated vs untreated comparison 32
4plex_Physco_2014-05Strigopath/Physcomitrella patensPhyscomitrella patenswhole plantArraysPpmax2 response to GR24genotype comparaison,normal vs transgenic comparaison,treated vs untreated comparison 6
4PLEX_TOMATO_2013_03Effect of drought stress on the transcriptome of tomato leaves.
#PubMed:26582510
Solanum lycopersicumcaulin leafArrays4PLEX_TOMATO_2013_03genotype comparaison 8
ADT03-02_Leaf_Flower-B...Genes expressed in flowers and leaves
#PubMed:15269332
Arabidopsis thalianaflower, rosetteArraysLeaf_Flower-budorgan comparison 2
ADT04-03_FDH_Drought Analysis of FDH (Formate dehydrogenase) insertion mutants in response to drought stress. Arabidopsis thalianarosetteArraysDrought stressgene knock out,treated vs untreated comparison 14
ADT05-01_Hormon_cellsEffect of the Auxin/Cytokinin ratio on the transcriptome of stem cellsArabidopsis thalianacell culture/primary cellArraysCyt_Aux_Balancedose response 21
ADT05-04_DRNEmbryonic patterning in Arabidopsis thalianaArabidopsis thalianaseedArraysmutant vs wildtypegene knock out 4
ADT05-04_DRNEmbryonic patterning in Arabidopsis thalianaArabidopsis thalianaprotoplastArraysDRN/DRN-L expressing cells vs non-epressing cellsgenotype comparaison 12
ADT06-01_ESR1-DRN_dexa...Transcriptomic study of the transcription factor ESR1/DRN.
#PubMed:23011125
Arabidopsis thalianawhole plantArraysESR1-DRNnormal vs transgenic comparaison 12
ADT06-02_PollenComparison between Columbia and WS pollen RNAs.Arabidopsis thalianapollenArraysPollenecotype comparison 2
ADT06-03_MKK2-cold Transcriptomic analysis of mkk2 upon Cold stress
#PubMed:19529823
Arabidopsis thalianawhole plantArraysMutantsgene knock out 14
ADT06-03_MKK2-coldTranscriptomic analysis of mkk2 upon Cold stressArabidopsis thalianaaerialArraysMKK2_mkk2_and_WRKY19_cold_time_coursetime course,wt vs mutant comparison 28
ADT06-04_miRNA_Nitroge... To discover miRNA implied following a Nitrogen starvation and after re-supply.Arabidopsis thalianaroots, rosetteArraysmiRNA_Nitrogentime course 8
ADT07-01_miRNA-NmiRNA and Nitrogen starvation and resupplyArabidopsis thalianaroots, rosetteArraysNitrogen starvationtime course 16
ADT07-02_C-N_Cells C/N balance in cellsArabidopsis thalianacell culture/primary cellArraysCellsdose response 18
ADT07-03_miR398-mutant...Analysis of miR398 mutants.
#PubMed:20128885
Arabidopsis thalianarosetteArraysmiR398 mutant analysisgene knock out 8
ADT08-01_uppTrancriptome analysis of the Arabidopsis upp-1/2 mutantsArabidopsis thalianawhole plantArraysADT08-01_uppwt vs mutant comparison 16
ADT09-01_Thellungiellaosmotic stress tolerance in Thellungiella halophylaArabidopsis thaliana, Thellungiellapistil,stamen, rosetteArraysThelungiellagenotype comparaison 4
ADT09-02_firemanImpact of the fireman mutation in the Erwinia amylovora response of Arabidopsis Arabidopsis thalianaaerialArraysFireman vs WT Erwinia infectionnormal vs disease comparison,normal vs transgenic comparaison 8
ADT10-01_WIP2Transcriptome analysis of WIP overexpressing plantsArabidopsis thalianaseedlingArraysWIP overexpressing plantsgene knock in (transgenic),normal vs transgenic comparaison 9
ADT10-02_35sUPRTTranscriptomic analysis of overexpression URPT gene.
#PubMed:19563437
Arabidopsis thalianawhole plantArraysUPRT overexpression normal vs transgenic comparaison 10
ADT12-01_UPRTPlant RABT n°1Arabidopsis thalianawhole plantArraysPlant RABT n°1treated vs untreated comparison 8
AF01_Cul3_aMolecular and functional characterisation of Arabidopsis Cullin 3A
#PubMed:15659098
Arabidopsis thalianawhole plantArraysComparisonnormal vs disease comparison 6
AF01_Cul3a2_Cul3bStudy of the function of SCF complexes in Arabidopsis.Arabidopsis thalianaseedlingArrayscomparison WS vs CRB (Cul3a)wt vs mutant comparison 6
AF01_Cul3a2_Cul3bStudy of the function of SCF complexes in Arabidopsis.Arabidopsis thalianaseedlingArrayscomparison Col0 vs 003Dwt vs mutant comparison 6
AF09_HCAMolecular characterization of a mutant altered in the vascular system organization (hca: high cambial activity).
#PubMed:16212606
Arabidopsis thalianaseedlingArrayscomparison mutant HCA vs WSwt vs mutant comparison 6
AF09_lignin Lignin mutants and UV stress
#PubMed:19149885
Arabidopsis thalianastemArraysCCRnormal vs disease comparison 4
AF09_ligninLignin mutants and UV stress Arabidopsis thalianawhole plantArraysDML6normal vs disease comparison,treated vs untreated comparison 8
AF09_ligninLignin mutants and UV stress Arabidopsis thalianawhole plantArraysEBL87normal vs disease comparison,treated vs untreated comparison 4
AF09_ligninLignin mutants and UV stress Arabidopsis thalianastemArraysstem developementtime course 3
AF09_ligninLignin mutants and UV stress Arabidopsis thalianastemArraysCDnormal vs disease comparison 6
AF09_ligninLignin mutants and UV stress Arabidopsis thalianastemArraysBXnormal vs disease comparison 4
AF13_PLP2 Functionnal analysis of lipid acyl hydrolases in Arabidopsis antimicrobial defenseArabidopsis thalianarosetteArraysPLP2 Bc 1normal vs rnai mutant comparaison,time course,treated vs untreated comparison 9
AF13_PLP2Functionnal analysis of lipid acyl hydrolases in Arabidopsis antimicrobial defenseArabidopsis thalianarosetteArraysPLP2 Botrytis cinerea 2gene knock in (transgenic),normal vs rnai mutant comparaison,time course 5
AF13_PLP2Functionnal analysis of lipid acyl hydrolases in Arabidopsis antimicrobial defenseArabidopsis thalianarosetteArraysPLP2 Paraquatgene knock in (transgenic),time course 7
AF24_CytP450_Cyp98A3comparison mutant cytP450 vs control WS
#PubMed:16377748
Arabidopsis thalianawhole plantArrayspolyphenolwt vs mutant comparison 2
AF30_Starch_circadian_...The impact of some genes mutations implicated in the amidon metabolismArabidopsis thalianarosetteArraysDouble mutant SBEgene knock out 12
AF30_Starch_circadian_...The impact of some genes mutations implicated in the amidon metabolismArabidopsis thalianarosetteArraysCircadian cycletime course 10
AF31_HAF2_GCN5histone acetylation required for gene expression during germinationArabidopsis thalianaseedlingArraysComparison WS vs HAF2_GCN5wt vs mutant comparison 9
AF31_mgoun3Leaves transcriptome analysis of mgo3 mutant in Arabidopsis thaliana
#PubMed:16728410
Arabidopsis thalianaseedlingArraysComparison WS vs DRNwt vs mutant comparison 6
AF31_TAFhaf2Gene expression affected by the mutation of Arabidopsis thaliana HAF2 gene encoding TATA-binding protein (TBP)-associated factor TAF1
#PubMed:15525647
Arabidopsis thalianarosetteArrayscomparison TAF WSwt vs mutant comparison 6
AF32_Root-Knot_Nematod... Response to nematode infection
#PubMed:16236154
Arabidopsis thalianarootsArraysNematode-1normal vs disease comparison 12
AF47_ThioredoxinsImpact of a plastidial redox perturbation on Arabidopsis transcriptomeArabidopsis thalianarosetteArraysComparison Ws vs DE and DYwt vs mutant comparison 6
AF51_ATM A functional study of genes that might play a role in DNA repair/recombination and in the response to oxidative stress (Microarrays expression studies, Microbiological assays, In planta functional studies)
#PubMed:17487278
Arabidopsis thalianawhole plantArraysATM time coursetime course 16
AF51_ATMA functional study of genes that might play a role in DNA repair/recombination and in the response to oxidative stress (Microarrays expression studies, Microbiological assays, In planta functional studies)Arabidopsis thalianaseedlingArraysSADE-CATMAtreated vs untreated comparison 4
AF51_ATMA functional study of genes that might play a role in DNA repair/recombination and in the response to oxidative stress (Microarrays expression studies, Microbiological assays, In planta functional studies)Arabidopsis thalianarootsArraysATM-ROOTtreated vs untreated comparison 8
AF73_OST2 Open stomata 2 mutantArabidopsis thalianaaerialArraysOPEN STOMATA2wt vs mutant comparison 12
AFFY_Aba_Ath1Characterization of aba3-1 suppressor mutantsArabidopsis thalianaaerialArraysAFFY_Aba_Ath1wt vs mutant comparison 12
AFFY_AGRO-BI_MedicagoAGRO-BI-ToulouseMedicago truncatularootsArraysAFFY-AGRO-BI-Medicagogrowth in nitrogen-sufficient (s) vs. nitrogen-limited (l) conditions 18
AFFY_AMs_MAIZECell wall maize mutant during arbuscular mycorrhizal symbiosisZea maysrootsArraysAFFY_AMs_MAIZEtreated vs untreated comparison 8
AFFY_Aphanomyces_Medic...Comparison of plant responses upon Aphanomyces euteiches infection in wild type (A17) line and in the nfp-2 mutant
#PubMed:27994614, 23432463
Medicago truncatularootsArraysAFFY_Aphanomyces_Medicagonear isogenic lines (hif),normal vs ems mutant comparison 12
AFFY_ATH_2012_04Fonctional caracherization of JMJ24, a putative histone demethylaseArabidopsis thalianaaerialArraysAFFY_ATH_2012_04gene knock out 8
AFFY_ATH_2012_05Arabidopsis Ubiquitin-Like Proteases characterization
#PubMed:27325215
Arabidopsis thalianaseedlingArraysAFFY_ATH_2012_05gene knock out 12
AFFY_BRACHY_2011_11Transcriptomics analysis of DON and Fusarium graminearum response in Brachypodium distachyon
#PubMed:25063396
Brachypodium distachyonsilique and seedArraysAFFY_BRACHY_2011_11normal vs disease comparison,time course 9
AFFY_Bt2_maizePhenotypic and molecular characterisation of a novel Bt2 allele in maize
#PubMed:18287491
Zea maysseedArraysAFFY_Bt2_maizegene knock out 4
AFFY_CCR_MaizeDownregulation of cinnamoyl-coenzyme A reductase in maize
#PubMed:21493812
Zea maysaerialArraysAFFY_CCR_Maizegene knock in (transgenic) 4
AFFY_Cellwall_MaizeUnderstanding the Diversity of Maize Cell WallZea maysstemArraysAFFY_Cellwall_Maizeorgan comparison 10
AFFY_cinetique_Lyon_Ro...Flower/Petal initiation and development in roses
#PubMed:22194838
Rosa chinensisflowerArraysAFFY_cinetique_Lyon_Rosetime course 12
AFFY_COTTON_2011_12Comparative transcriptional profiling of cotton fibers in Gossypium hirsutum and Gossypium barbadense using EST pyrosequencing and microarray hybridization
#PubMed:23166598
Gossypium hirsutumseedArraysAFFY_COTTON_2011_12x comparison between two genotypes in cell type 4
AFFY_Diversity_MaizeUnderstanding the Diversity of Maize Cell WallZea maysstemArraysAFFY_Diversity_Maizeorgan comparison 4
AFFY_duplicature_Lyon_...Double flower phenomenon: Control of petal number in roses
#PubMed:22194838
Rosa hybrida , Rosa gallicaflowerArraysAFFY_duplicature_Lyon_Rosegenotype comparaison 8
AFFY_EN-TJ_MaizeUnderstanding the Diversity of Maize Cell WallZea maysaerialArraysAFFY_TJ_Maizegenotype comparaison 4
AFFY_EN-TJ_MaizeUnderstanding the Diversity of Maize Cell WallZea maysaerialArraysAFFY_EN_Maizegenotype comparaison 4
AFFY_floralAngers_RoseStudy of floral initiation and recurrent blooming in rose
#PubMed:22194838
Rosa hybrida , Rosa lucieaeshoot apexArraysAFFY_floral_Rosetime course 26
AFFY_H2O2_MedicagoIdentification of putative H2O2 regulated genes during the establishment of the Sinorhizobium meliloti – Medicago truncatula symbiotic interaction.
#PubMed:23347006
Medicago truncatularootsArraysAFFY_H2O2_Medicagotreated vs untreated comparison 8
AFFY_herbicide_vulpinMetabolism-based resistance to herbicides in black-grassAlopecurus myosuroidestillerArraysAFFY_herbicide_vulpintreated vs untreated comparison 6
AFFY_hypocTemp_Medicag...Identification of molecular factors explaining decreased hypocotyl growth at low temperature in Medicago truncatula.Medicago truncatulahypocotylArraysAFFY_hypocTemp_Medicagotime course 24
AFFY_L2BCTV_AthExpression viral protein L2 BCTV in Arabidopsis thaliana
#PubMed:22404507
Arabidopsis thalianaaerialArraysAFFY_L2BCTV_Athgene knock in (transgenic) 9
AFFY_MED_2010_12Comparison of plant responses upon Aphanomyces euteiches infection in wild type (A17) line and in the Mtnf-ya1-1 mutantMedicago truncatularootsArraysAFFY_infection_Medicagonormal vs disease comparison,normal vs ems mutant comparison,time course 12
AFFY_MED_2011_04Molecular mechanisms of partial resistance to Aphanomyces euteiches in Medicago truncatula.
#PubMed:25765337
Medicago truncatularootsArraysAFFY_MolecularMechanism_Medicagoresistance vs susceptibility comparison,time course,treated vs untreated comparison 18
AFFY_MED_2011_06Analysis of the Medicago noot mutant Medicago truncatularootsArraysAFFY_MED_2011_06gene knock out,organ comparison 10
AFFY_MED_2011_09Analysis of Medicago truncatula root transcriptome in response to mycorrhization by Glomus intraradices under phosphate and nitrogen limitation
#PubMed:23506613
Medicago truncatularootsArraysAFFY_MED_2011_09wt vs mutant comparison 12
AFFY_MED_2011_10Comparison of plant responses upon Aphanomyces euteiches infection in wild type (A17) line and in the lyr3-1 and lyr3-2 mutantsMedicago truncatularootsArraysAFFY_MED_2011_10near isogenic lines (hif),normal vs mutant comparison 18
AFFY_MED_2011_14Transcriptomic analysis of roots of WT (A17) Medicago truncatula plants and of a hypermycorrhizal mutant (B9) grown on limiting (P/10) or non-limiting phosphate (P2).
#PubMed:24815324
Medicago truncatularootsArraysAFFY_MED_2011_14dose response,gene knock out 12
AFFY_MED_2012_03Characterization of new phytostimulatrices molecules for the improvement of plants products and crop resistance to diseasesMedicago truncatularootsArraysAFFY_MED_2012_03normal vs ems mutant comparison 27
AFFY_MED_2013_05Comparison between nodules of WT, NF737 and MS240 linesMedicago truncatularootsArraysAFFY_MED_2013_05gene knock out 9
AFFY_MeJA_ArabidopsisStudy of the effect of C2 on the transcriptome and the response to MeJAArabidopsis thalianawhole plantArraysAFFY_MeJA_Arabidopsisgene knock in (transgenic),treated vs untreated comparison 12
AFFY_meloidogyne_riceOryza sativa genes expressed in the early compatible interaction with root-knot nematodes Meloidogyne graminicola.Oryza sativarootsArraysAFFY_meloidogyne_ricenormal vs disease comparison,time course 9
AFFY_Meloidogyne_rice2Oryza sativa genes expressed in the early compatible interaction with root-knot nematodes Meloidogyne incognitaOryza sativarootsArraysAFFY_meloidogyne_rice2normal vs disease comparison 6
AFFY_mildey_vitisGene expression patterns associated to the grapevine resistance to downy mildew derived from Muscadinia rotundifoliaVitis viniferarosetteArraysAFFY_mildey_vitisnormal vs disease comparison 12
AFFY_Nitrogen_MedicagoRegulation of nitrogen acquisition (NO3-, NH4+ et N2) by the nitrogen status of the whole plant Medicago truncatula
#PubMed:18287487
Medicago truncatulaaerial, rootsArraysAFFY_Nitrogen_Medicagotreatment variations 26
AFFY_ORLEANS_CIRCADrythme circadien dans l’expression des gènes impliqués dans la formation du bois de peuplierPopulus tremula x Populus albastemArrayscircad_pop1time course 20
AFFY_pathogen_MedicagoIdentification of key genes involved in the establishment of symbiotic and pathogenic plant-microorganism interactions
#PubMed:22360638
Medicago truncatularootsArraysAFFY_pathogen_Medicagoorgan comparison 12
AFFY_pathogen_riceIdentification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
#PubMed:17905473
Oryza sativarosetteArraysAFFY_pathogen_ricenormal vs disease comparison,time course,treated vs untreated comparison 8
AFFY_PetalDvt_Lyon_Ros...Flower/Petal initiation and development in roses
#PubMed:22194838
Rosa hybrida petalArrays AFFY_PetalDvt_Lyon_Rosescented vs non scented flowers 4
AFFY_Phloem_ATh1transcriptome octopusArabidopsis thalianawhole plantArraysAFFY_Phloem_ATh1gene knock in (transgenic),gene knock out 6
AFFY_POP_2011_08TRANSCRIPTOMIC ANALYSIS OF POPLAR STEM ACCOMMODATION TO REPEATED BENDING
#PubMed:24684233
Populus tremula x Populus albastemArraysPOPLAR ESTRADIOL STUDYtime course 18
AFFY_POP_2011_08TRANSCRIPTOMIC ANALYSIS OF POPLAR STEM ACCOMMODATION TO REPEATED BENDINGPopulus tremula x Populus albastemArraysPOPLAR BENT STUDYgene knock in (transgenic) 53
AFFY_POPSEC_Nancy_Leav...Molecular bases of acclimatation and adaptation to water deficit in poplar
#PubMed:21073700
Populus deltoides x Populus nigrarosetteArraysAFFY_POPSEC_Nancy_Leaves2008_poplar treated vs untreated comparison 24
AFFY_POPSEC_Nancy_Leav...Molecular bases of acclimatation and adaptation to water deficit in poplarPopulus deltoides x Populus nigrarosetteArraysAFFY_POPSEC_Nancy_Leaves2007_poplar treated vs untreated comparison 45
AFFY_POPSEC_Nancy_POPH...Molecular bases of acclimation and adaptation to water deficit in poplarPopulus deltoides x Populus nigrarootsArraysAFFY_POPSEC_Nancy_POPHYDRO_Roots_poplar treated vs untreated comparison 4
AFFY_POPSEC_Nancy_Root...Molecular bases of acclimation and adaptation to water deficit in poplarPopulus deltoides x Populus nigrarootsArraysAFFY_POPSEC_Nancy_Roots_poplar treated vs untreated comparison 45
AFFY_POPSEC_Nancy_Stom...Molecular bases of acclimation and adaptation to water deficit in poplarPopulus deltoides x Populus nigrarosetteArraysAFFY_POPSEC_Nancy_Stomata_poplar treated vs untreated comparison 45
AFFY_Ralstonia_Medicag...Transcriptome analysis of the interaction Medicago truncatula - Ralstonia solanacearum
#PubMed:24325235
Medicago truncatularootsArraysAFFY_Ralstonia_Medicagonormal vs disease comparison,time course 27
AFFY_Ralstonia_Peeters...Ralstonia solanacearum effector-specific effect on Medicago truncatula trancriptome.Medicago truncatularootsArraysAFFY_Ralstonia_Peeters_Medicagogene knock out,normal vs disease comparison,time course,treated vs untreated comparison 24
AFFY_rewatering_poplarGlobal gene expression in young differentiating xylem of poplar in response to a drought –rewatering cyclePopulus tremula x Populus albastemArraysrewateringtreated vs untreated comparison 6
AFFY_Rice_2011_03Transcriptomic study of the rice seed compartimentation during germination
#PubMed:29213276, 25008975
Oryza sativaembryonic axis, endospermArraysAFFY_Compartimentation_Rice_Albumen_Embryonorgan comparison,time course 37
AFFY_RICE_2011_07: Transcriptomic analysis of rice leaves challenged with virulent and avirulent Xoo strains Oryza sativacaulin leafArraysAFFY_RIZ_2011_07avirulent vs virulent 18
AFFY_RICE_2012_01Transcriptomic study of rice seed ageingOryza sativaembryonic axisArraysIVTtreated vs untreated comparison 12
AFFY_RICE_2012_01Transcriptomic study of rice seed ageingOryza sativaembryonic axisArraysOVATIONtreated vs untreated comparison 6
AFFY_RNAI_CADpoplarTranscriptome analysis of RNAi-CAD transgenic poplarsPopulus tremula x Populus albaxylemArraysAFFY_RNAI_CADpoplarsnormal vs rnai mutant comparaison 13
AFFY_ROSE_2012_06Rose perfume studies
#PubMed:26138978
Rosa chinensispetalArraysAFFY_ROSE_2012_06normal vs rnai mutant comparaison 8
AFFY_seed_kinetic_Whea...Transcriptomic wheat seed
#PubMed:20697765, 22136458
Triticum aestivumseedArraysAFFY_seed_kinetic_Wheattime course 10
AFFY_Strigolactone_Sun...Identification of Strigolactone -regulated genes in sunflowerHelianthus annuusrootsArraysAFFY_Strigolactone_Sunflowertreated vs untreated comparison 24
AFFY_SUNFLOWER_2010_13ROS and hormones in sunflower seed dormancy.Helianthus annuusembryonic axisArraysAFFY_SUNFLOWER_2010_13treated vs untreated comparison 12
AFFY_SUNFLOWER_2011_02Effect of frost on sunflowerHelianthus annuusaerialArraysAFFY_SUNFLOWER_2011_02treated vs untreated comparison 12
AFFY_Sunyfuel_drought_...Sunyfuel
#PubMed:23056196
Helianthus annuuscaulin leafArraysAFFY_Sunyfuel_drought_Sunflowertreated vs untreated comparison 96
AFFY_syringae_Malaga_A...Role of different proteases in plant defenceArabidopsis thalianacaulin leafArraysAFFY_syringae_Malaga_Athalianagene knock out,normal vs antisens mutant comparison 24
AFFY_TOUR_2010_21Assessing drought stress transcriptomics in Helianthus annus in field culturesHelianthus annuuscaulin leafArraysAFFY_TOUR_2010_21treated vs untreated comparison 24
AFFY_TOUR_2012-02Study of sunflower seed dormancy by translatome analysis
#PubMed:30127315, 25157915
Helianthus annuusseedArraysAFFY_TOUR_2012-02time course,treated vs untreated comparison 18
AFFY_Xoo_RiceTranscriptomics-based identification of Xoo strain BAI3 Talc targets in rice
#PubMed:21679014
Oryza sativaaerialArraysAFFY_Xoo_Ricewt vs virulence mutant 9
AFFY_ZeaWall_RIL_MaizeExpression studies in 5 early maize RIL with contracted allelic patterns at major QTL positions.Zea maysear internodeArraysAFFY_ZeaWall_RIL_Maizegenotype comparaison,time course 20
AU05-01_P25P25 Transgenic Arabidopsis. Characterization of genes differentially expressed in roots of transgenic arabidopsis lines expressing the p25 protein of beet necrotic yellow vein virus.
#PubMed:20602166
Arabidopsis thalianarootsArraysStages 1.02-1.04 and 1.06normal vs transgenic comparaison 8
AU05-02_FWAEffect of DNA hypomethylation on gene expressionArabidopsis thalianapollenArraysFWA-Pollengene knock out 6
AU05-02_FWAEffect of DNA hypomethylation on gene expressionArabidopsis thalianarosetteArraysFWA-leavesgene knock out 7
AU05-03_GABATranscriptomic analysis of pop2-1 mutant in Arabidopsis thaliana : a step towards elucidation of the role of GABA in plants.
#PubMed:21471118, 23148892
Arabidopsis thalianawhole plantArraysLer vs pop2-1: GABA over-accumulation effectsgene knock out,time course 16
AU05-05_Rhodococcus Molecular analysis of symptom development on Arabidopsis Thaliana by the pathogenic bacterium Rhodococcus fascians.
#PubMed:19118125
Arabidopsis thalianastemArraysRhodococcus responsenormal vs disease comparison,time course 12
AU06-01_ITEGEImpact of Transposable Elements on Gene Regulation Arabidopsis thalianaaerial, flower, rosette, seedlingArraysEcotypes comparison (Col0 and Ler0)ecotype comparison 8
AU06-01_ITEGEImpact of Transposable Elements on Gene Regulation Arabidopsis thalianaaerial, flower, seedlingArrays Impact of the gcn2 mutationgene knock out 6
AU06-01_ITEGEImpact of Transposable Elements on Gene Regulation Arabidopsis thalianaaerial, flower, seedlingArrays Impact of SINE RNA gene knock in (transgenic) 6
AU06-02_Bzo2hFunctional Characterization of AtbZIP9Arabidopsis thalianawhole plantArraysZIP9_target_genesgene knock in (transgenic),gene knock out 9
AU06-03_TSN_FJTudor-SN knockout
#PubMed:20484005
Arabidopsis thalianarootsArraysTSN_FJgene knock in (transgenic),gene knock out 12
AU07-01_PLD-SARole of phospholipase D in salycilc acid signaling in Arabidopsis thaliana suspension cells.
#PubMed:19304931
Arabidopsis thalianacell culture/primary cellArraysidentification of SA responsive genes dependent on PLD activationtreated vs untreated comparison 12
AU07-02_TRV Functional Genomic study in virus-infected plants.
#PubMed:25358898
Arabidopsis thalianaaerialArraysArabidopsis transcriptome microarray from virus infected plants.normal vs disease comparison 6
AU07-02_TRVFunctional Genomic study in virus-infected plants.Arabidopsis thalianarootsArraysArabidopsis transcriptome microarray from virus infected roots.normal vs disease comparison 6
AU07-02_TRVFunctional Genomic study in virus-infected plants.Arabidopsis thalianarosetteArraysArabidopsis transcriptome microarray from virus infected leafs.normal vs disease comparison 6
AU07-03_MYB77Functional characterization of AtMYB77 transcription factor.Arabidopsis thalianaseedlingArraysWT/MYB77gene knock in (transgenic),gene knock out 6
AU07-04_VIP1Identification of the VIP1 targetsArabidopsis thalianawhole plantArraysper8::VIP micro-arraytreated vs untreated comparison 12
AU07-05_GroundwormsEffect of earthworms on Arabidopsis transcriptome.
#PubMed:23226498
Arabidopsis thalianaaerial, rootsArraysGroundwormstreated vs untreated comparison 8
AU07-06_GDHTranscriptomique analysis of GDHArabidopsis thalianaroots, rosette, stemArraysTrancript profiling in Arabidopsis GDH mutant.wt vs mutant comparison 21
AU07-07_Salmonella Interactions between plants and human pathogenic bacteria.
#PubMed:21915285
Arabidopsis thalianawhole plantArraysInfection with Salmonella or Pseudomonas or E. coli.treated vs untreated comparison 8
AU07-08_SQE Plant Small RNAs.Arabidopsis thalianawhole plantArraysNaCltreated vs untreated comparison 6
AU07-09_Alternaria Changes in gene expression in MKK2 and MKKKC5 mutantsArabidopsis thalianarosetteArraysAlternariatreatment variations 18
AU07-09_AlternariaChanges in gene expression in MKK2 and MKKKC5 mutantsArabidopsis thalianarosetteArraysMKK2EE and mkkkc5 mutantswt vs mutant comparison 6
AU07-10_mpkTranscriptomic analysis of MAPK KOs mutants under normal growing conditions.Arabidopsis thalianaseedlingArraysBBgene knock out 2
AU07-10_mpkTranscriptomic analysis of MAPK KOs mutants under normal growing conditions.Arabidopsis thalianaseedlingArraysmpkgene knock out 14
AU07-11_haikuStudy of small seed mutants.Arabidopsis thalianaseedArraysCompare haiku mutants with wildtypegene knock out 14
AU07-12_GeminiSelSupBiodiversity and functional genomics of endogenous small RNAs induced upon biotic and abiotic stresses in plants.
#PubMed:21441437
Arabidopsis thalianawhole plantArraysGEMSUPgene knock in (transgenic) 12
AU07-13_SQE1Functional analysis and biotechnological application of genes involved in drought and salt stress tolerance in plants.Arabidopsis thalianarosetteArraysSQE1gene knock out 6
AU08-01_Cytb561Ascorbate metabolism in plants: physiological function and biochemical properties of cytochromes b561Arabidopsis thalianarosetteArrayscytb1-1gene knock out 8
AU08-02_mkk1-mkk2Transcriptome of mkk1-mkk2 mutants.Arabidopsis thalianaseedlingArraysmkk1-mkk2gene knock out 6
AU08-04_DFOAnalysis of Arabidopsis transcriptome in response to deferoxamine.
#PubMed:24501001
Arabidopsis thalianaroots, rosetteArraysAnalysis of deferoxamine treated leaves and rootstime course,treated vs untreated comparison 16
AU08-05_p25IndGlobal transcriptome deregulation of P25 expressing Arabidospis thaliana.
#PubMed:20602166
Arabidopsis thalianarootsArraysComparison between constitutive and inducible p25 plantsgene knock in (transgenic) 20
AU08-06_mpk6_heat_stre... Transcriptomic analysis of mpk6 KO mutant after heat stress treatment
#PubMed:22236066
Arabidopsis thalianaseedlingArraysAU08-06_mpk6_heat_stressedtreated vs untreated comparison 8
AU-09-01_mpk_flagellin...Flagellin response in mpk mutants.Arabidopsis thalianaseedlingArraysmpk4 flg22treated vs untreated comparison 4
AU-09-01_mpk_flagellin...Flagellin response in mpk mutants.Arabidopsis thalianaseedlingArraysmpk3 flg22treated vs untreated comparison 4
AU-09-01_mpk_flagellin...Flagellin response in mpk mutants.Arabidopsis thalianaseedlingArraysBak1 bkk1 flg22treated vs untreated comparison 4
AU-09-01_mpk_flagellin...Flagellin response in mpk mutants.Arabidopsis thalianaseedlingArraysmpk3wt vs mutant comparison 4
AU-09-01_mpk_flagellin...Flagellin response in mpk mutants.Arabidopsis thalianaseedlingArraysmpk6 flg22treated vs untreated comparison 4
AU-09-01_mpk_flagellin...Flagellin response in mpk mutants.Arabidopsis thalianaseedlingArraysmpk6gene knock out 4
AU-09-01_mpk_flagellin...Flagellin response in mpk mutants.Arabidopsis thalianaseedlingArraysBak1Bkk1gene knock out 4
AU-09-01_mpk_flagellin...Flagellin response in mpk mutants.Arabidopsis thalianaseedlingArraysCol-0 flg22treated vs untreated comparison 4
AU09-02_WOX14Gene expression affected by the AtWOX14 gene mutation.Arabidopsis thalianaseedlingArraysWOX13 orthologous groupgene knock out 8
AU09-03_gamma-irradiat... Transcriptomic analysis of effetcs of ionising radiation on Arabidopsis thaliana.
#PubMed:22921004
Arabidopsis thalianawhole plantArrays2 doses of ionising radiations (X-rays) dose response,time course 12
AU09-04_GeminiSilSup2PLASMAR. Biodiversity and functional genomics of endogenous small RNAs induced upon biotic and abiotic stresses in plants.Arabidopsis thalianawhole plantArraysGEMSUPV2gene knock in (transgenic) 6
AU10-01_overexpression...Transcriptomic analysis of the overexpression of Oxi1Arabidopsis thalianarosetteArraysAU10-01_overexpressionoxi1normal vs transgenic comparaison 4
AU10-03_hub1Kinetics of gene expression after light exposure in hub1-3 mutant compared to wild-type
#PubMed:22829781
Arabidopsis thalianaseedlingArraysKinetics of gene expression after light exposure in hub1-3 mutant compared to wild-typegenotype comparaison,time course 12
AU10-04_phytoremediati...phytoremediation
#PubMed:27769163
Arabidopsis thalianawhole plantArraysImpact of sucrose on the tolerance of phenanthrenetreated vs untreated comparison 33
AU10-06_SalmonellaTrancriptomic analysis in Salmonella typhimurium infectionArabidopsis thalianaseedlingArraysinvA_vs_14028Snormal vs disease comparison 4
AU10-06_SalmonellaTrancriptomic analysis in Salmonella typhimurium infectionArabidopsis thalianaseedlingArraysSalmonella_prgHnormal vs disease comparison 4
AU10-06_SalmonellaTrancriptomic analysis in Salmonella typhimurium infectionArabidopsis thalianaseedlingArraysSalmonella_14028Snormal vs disease comparison 4
AU10-06_SalmonellaTrancriptomic analysis in Salmonella typhimurium infectionArabidopsis thalianaseedlingArraysSalmonell invAnormal vs antisens mutant comparison 4
AU10-07_MPK4gofTranscriptome study of mpk4 complemented line with a hyperactive form of MPK4 (MPK4 GOF).Arabidopsis thalianawhole plantArraysmpk4/MPK4 GOF vs mpk4/MPK4 vs Col0genotype comparaison 8
AU10-09_GemSupV2TS-7Biodiversity and functional genomics of endogenous small RNAs induced upon biotic and abiotic stresses in plants.Arabidopsis thalianawhole plantArraysGEMSUPV2TS-7gene knock in (transgenic) 6
AU10-10_ColdPI4kinases and Long-chain bases kinases in response to cold stress
#PubMed:24758581
Arabidopsis thalianawhole plantArraysdefenses mechanism in response to cold stresstreated vs untreated comparison 16
AU10-11_DspAGene expression in response to the expression of the bacterial type 3 effector DspA/E
#PubMed:23634775
Arabidopsis thalianaseedlingArraysInduction of DspA/E expression in a transgenic A. thaliana linegene knock out,genotype comparaison,treated vs untreated comparison 8
AU10-12_PAPhosphatidic acid in gene expression
#PubMed:23964284
Arabidopsis thalianacell culture/primary cellArraysPhosphatidic acid in gene expressiontreated vs untreated comparison 30
AU10-13_CellWallDifferentially expressed genes in stems of Arabidopsis deficient in monolignol export and in stems of Arabidopsis plants expressing a hydroxycinnamoyl-CoA hydratase/lyase
#PubMed:22458713
Arabidopsis thalianastemArrayscell wall mutants gene knock in (transgenic),normal vs transgenic comparaison 9
AU10-14_FerRole of ethylene in Fe deficieny response signalling
#PubMed:21586684, 22212120
Arabidopsis thalianawhole plantArraysResponse of ein3eil1 mutants to Fe deficiencygene knock out,treated vs untreated comparison 12
AU10-15_cinerootstransdifferenciation from root to shoot apical meristem Arabidopsis thalianarootsArraystransdifferenciationtime course 8
AU11-01_WOX14bisFloral stem gene expression affected by the AtWOX14 gene mutationArabidopsis thalianastemArraysTranscriptome analyses of N8514 and wox14gene knock out,normal vs transgenic comparaison 4
AU11-02_CHO-THFTranscriptomic and metabolic changes in Arabidopsis thaliana supplemented with 5-CHO-THF and its relationship with the accumulation and transformation to THF active derivativesArabidopsis thalianacaulin leaf, rootsArraysshoots and roots treated with Methotrexate and 5-Formyl-THFtreated vs untreated comparison 18
AU11-03_GraviteAction of microgravity on root developmentArabidopsis thalianarootsArraysAction of microgravity on root developmenttreated vs untreated comparison 12
AU11_04_BenzeneStudy of benzene metabolism in higher plantsBrassica napuscaulin leafArraysBenzene effects on Brassica leavestreated vs untreated comparison 2
AU12-01_DetoxStudy of benzene metabolism in higher plants.Brassica oleraceacaulin leafArraysBenzene effects on leavestreated vs untreated comparison 8
AU12-06_CPSF30Cell death control by CPSF30.
#PubMed:24706550
Arabidopsis thalianarosetteArrayscpsf30 mips1 transcriptomegenotype comparaison 8
AU13-01_PI-PLCInhibition of the PI-PLC by U73122Arabidopsis thalianacell culture/primary cellArraysInhibition des PI-PLC par le U73122treated vs untreated comparison,treatment variations 6
AU13-03_CUC2Morphodynamics in Plants: from gene to shape.Arabidopsis thalianaflower budArraysIdentification of target genes regulated by CUC2 in A.thaliana shoot apical meristem.genotype comparaison 6
AU13-04_crlTranscriptome comparison of the crl mutant and CDT1-RNAi line
#PubMed:25037213
Arabidopsis thalianaseedlingArraysCDT1_bisnormal vs rnai mutant comparaison,normal vs transgenic comparaison 8
AU13-06_FITDifferential gene expression in A. thaliana roots depending on iron supply and FIT (FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR) abundanceArabidopsis thalianarootsArraysFe-FIT-Diffnormal vs transgenic comparaison,treated vs untreated comparison 18
AU13-07_OxbHLH039 overexpression results in iron accumulation dependent on the FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (FIT)
#PubMed:28883478
Arabidopsis thalianaseedling, whole plantArraysComparison 39Ox and WT samples with or without Fenormal vs transgenic comparaison,treated vs untreated comparison 12
AU13-08_AtpPLAII-alphaNoneArabidopsis thalianarosetteArraysTranscriptional profilling of Arabidopsis plants.genotype comparaison,treated vs untreated comparison 12
AU13-11_GravityGravitational signature of synchronized cell cultures in particular cell cycle stagesArabidopsis thalianacell culture/primary cellArraysGravitytime course,treated vs untreated comparison 12
AU13-12_Polysometranscriptomic and translatomic analysis of Arabidopsis seeds
#PubMed:26019300
Arabidopsis thalianaseedArraysTranscriptome and translatome of Arabidopsis WT seeds according to dormancytime course 24
AU13-14_MYB1MYB1’s partnersArabidopsis thalianastemArraystranscript modification by MYB1 interactantsnormal vs transgenic comparaison 12
AU13-15_sup62Transcriptome sup62 and cpsf30 mpk4Arabidopsis thalianaaerial,rosetteArrays4 mutantsgene knock out,genotype comparaison 10
AU14-01_TnProjet TN 2014 : effet sur Arabidopsis thaliana.Arabidopsis thalianacaulin leafArraysObservation des effets du produit Tn sur l’expression des gènes d’A.thaliana.dose response 10
AU14-03_BIGUNFunctional characterization of BIGUN proteins in Arabidopsis thaliana.Arabidopsis thalianarosetteArraysbigun transcriptomicsgene knock out,normal vs disease comparison 18
AU14-04_INASEEDINASEEDarray
#PubMed:30998684
Arabidopsis thalianaseed,seedlingArraysINASEEDarraygene knock out 18
AU14-05_pi4kbeta1beta2pi4kbeta1beta2 sid2 triple mutantArabidopsis thalianarosetteArrayspi4kbeta1beta2 sid2 triple mutantgenotype comparaison 8
AU14-08_xrn_vcsSeed transcriptome of xrn4-5 and vcs-8 mutants.
#PubMed:28126845
Arabidopsis thalianaseedArraysSeed transcriptome of xrn4-5 and vcs-8 mutants.gene knock out 9
AU14-09_SiliceImpact on Arabidopsis thaliana transcriptome of multifunctional silica nanoparticles based on metal atom clusters.Arabidopsis thalianacell culture/primary cellArraysCLUSTOP transcriptomics.treated vs untreated comparison 10
AU14-10_WD40Effet of light on translatome of Arabidopsis seeds during germinationArabidopsis thalianaseedArraysEffet of light on translatome of Arabidopsis seeds during germinationtreated vs untreated comparison 12
AU14-11_LevureStudy the genes expression by a residue of cultureArabidopsis thalianacell culture/primary cellArraysStudy of a kinetic answertime course,treated vs untreated comparison 8
AU15-01_IRON-FITDifferential gene expression in A. thaliana roots depending on iron supply and FIT (FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR) abundance.
#PubMed:27716045
Arabidopsis thalianaseedlingArraysFe-FIT-Diff_6dgene knock in (transgenic),gene knock out,treated vs untreated comparison 18
AU15-02_TRXRedox regulation in plants.Arabidopsis thalianaaerialArraysEffect of FTR mutation on Arabidopsis trancriptomegene knock out 12
AU15-04_XenoMolecular analysis of signal transduction mechanisms involved in plant – organic pollutant interactions.
#PubMed:30080643
Arabidopsis thalianarosetteArraysTranscriptomic analysis of the effects of low levels of atrazine and by-productstreated vs untreated comparison 8
AU15-05_FITDifferential gene expression in A. thaliana seedlings depending on the introduction of a point mutation in FIT (FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR) under iron deficient conditions.Arabidopsis thalianaseedlingArraysDifferential gene expression in A.Tha. depending on mutation in FITgene knock out,genotype comparaison,normal vs transgenic comparaison 12
AU17-01_Dgk5.1_bisTranscriptome analysis of dgk5 mutant (with 3 biological replicats).Arabidopsis thalianaseedlingArraysTranscriptome analysis of dgk5 mutant in response to flagellintreated vs untreated comparison 12
BLAN08_RNApathsIntegrating RNA Quality Control and RNA Silencing PathwaysArabidopsis thalianaaerialArraysAnalyses of endogenous RNA substrates of XRN and exosome and PTGS pathways.gene knock in (transgenic),gene knock out 34
Blanc-08-01_2012_01_RN...RNAPATHS-3Arabidopsis thalianaseedlingArraysRNAPATHS--3_02/2012genotype comparaison 16
Blanc-08-01_2012_01_RN...study the role of AtNSRs proteins in the regulation of gene expression
#PubMed:25073154
Arabidopsis thalianawhole plantArraysAtNSRsgene knock out 12
BRA-INRA09-01_BIOENEnergetic Homeostasis and Sugar SignalingArabidopsis thalianawhole plantArraysCordycepintreatment variations 15
BRA-INRA09-01_BIOENEnergetic Homeostasis and Sugar SignalingArabidopsis thalianawhole plantArraysBZIP9genotype comparaison 24
BRA-INRA09-01_BIOENEnergetic Homeostasis and Sugar SignalingArabidopsis thalianawhole plantArraysabi4wt vs mutant comparison 15
BRA-INRA09-02_BIOEN_Ni...Nitrate induction - nlp mutants
#PubMed:23591880
Arabidopsis thalianawhole plantArraysNitrate induction - nlp mutantsgene knock out,time course 26
CAT-seqComparative Arabidopsis Transcriptome -Sequencing
#PubMed:27742662
Arabidopsis thalianaaerialArraysCRR4_DYW1_Col0genotype comparaison 6
CAT-seqComparative Arabidopsis Transcriptome -SequencingArabidopsis thalianaaerial, flower budArraysBF_vs_Forgan comparison 4
CEA03-01_Cadmium Dynamic of the Arabidopsis thaliana transcriptome following a cadmium exposition
#PubMed:16797112
Arabidopsis thalianaroots, rosetteArraysCadmium effect on roots and leavesdose response,time course 54
CEA03-02_Translatome-C... Analysis of the translatome of Arabidopsis in response to Cadmium stress
#PubMed:21252299
Arabidopsis thalianacell culture/primary cellArraysTranslatome-Cdtranscribed vs translated,treated vs untreated comparison 12
CEA05-01_carbonic-anhy...Comparative transcriptome analysis between carbonic anhydrase mutants and wild type ArabidopsisArabidopsis thalianarosetteArrayscarbonic anhydrase (1 or 2) simple or double mutantsgene knock out 8
CEA06-01_Uranyl_nitrat...Transcriptomic analysis of uranyl response in Arabidopsis thalianaArabidopsis thalianarosetteArraysTime course Uranyl nitrate responseorgan comparison,time course,treated vs untreated comparison 36
CEA06-02_folatedynamics of Arabidopsis transcriptome during folate depletion
#PubMed:18931140
Arabidopsis thalianacell culture/primary cellArraysmethotrexate treatmenttime course,treated vs untreated comparison 14
CEA10-01_PhosphateTranscripomics on the Arabidopsis Root tip during phosphate starvationArabidopsis thalianarootsArraysTranscripomics on the Arabidopsis Root tip during phosphate starvationtime course,treated vs untreated comparison 12
CEA10-02_LightPhotooxidative stress and light acclimation in the PSII antenna-deficient ch1 mutantArabidopsis thalianaaerialArraysPhotooxidative stress genotype comparaison,treated vs untreated comparison 24
CEA10-03_CyclocitralCharacterization of β-cyclocitral effects in Arabidopsis thaliana.
#PubMed:22431637
Arabidopsis thalianaaerialArraysAnalysis of Arabidopsis transcriptome in response to b-cyclocitral treatmenttreated vs untreated comparison 6
CEA11-02_PhosphatinPhosphatin effect on ArabidopsisArabidopsis thalianarootsArraysTranscriptomic analysis of Phosphatin effecttreated vs untreated comparison 9
CEA12-02_ChloroSapChloro-Sap
#PubMed:28220595
Arabidopsis thalianaaerialArraysComparison after 4 and 52hnormal vs transgenic comparaison,time course 18
CEA13-01_oxi1Transcriptomic analysis on the effect of oxi1 mutation under high light.
#PubMed:26747288
Arabidopsis thalianarosetteArraysoxi1 Transcriptomegenotype comparaison 8
FAPESP-BRA-INRA-10-01_...Dark hypocotyls TOR RNAiArabidopsis thalianahypocotylArraysDark hypocotyls TOR RNAinormal vs rnai mutant comparaison 6
GEN26_DroughtStress Transcriptional and translational status of genes responding to drought stress Arabidopsis thalianaaerialArraysDroughttreated vs untreated comparison 12
GEN45-Carpel_developme...Modelling the Transcriptional Network in Arabidopsis Fruit Development.Arabidopsis thalianaflowerArrayscrc1 mutantgene knock out 2
GEN45-Carpel_developme...Modelling the Transcriptional Network in Arabidopsis Fruit Development.Arabidopsis thalianaaerial, flowerArraysOverexpressorstreated vs untreated comparison 32
GnP06-01b_AgriArray New developments towards a genetic and diagnosis use of plant microarrays
#PubMed:21900481
Arabidopsis thalianacaulin leaf, rootsArraysNitrogen starvation time course,tissue comparison 6
GnP06-01b_AgriArrayNew developments towards a genetic and diagnosis use of plant microarraysArabidopsis thalianaroots, rosetteArraysMultiplexage : dual-target hybridization microarray experimentgenotype and ecotype comparison 48
GnP06-02_StarchInitiation synthesis and degradation : an integrated approach toward the understanding of starch metabolism and formation in plants.Arabidopsis thalianarosetteArraysISD-Starchgene knock out 60
GnP06-03_MicroTrAc Gene profiling of Turnip Crinkle Virus (TCV) siRNA in mutants at generation G1 and G10.Arabidopsis thalianaflowerArraysEndogenous Hairpins-IR71 targetsgene knock out 6
GnP06-03_MicroTrAcGene profiling of Turnip Crinkle Virus (TCV) siRNA in mutants at generation G1 and G10.Arabidopsis thalianarosetteArraysGene profiling of Turnip Crinkle Virus (TCV) siRNA in mutants at generation G1 and G11gene knock out,treated vs untreated comparison 20
GnP06-03_MicroTrAcGene profiling of Turnip Crinkle Virus (TCV) siRNA in mutants at generation G1 and G10.Arabidopsis thalianarosetteArraysGene profiling of viral siRNA in mutants at generation G1.gene knock out,treated vs untreated comparison 8
Gnp07_Regeneome_cuc2Gnp07_Regeneome_cuc2Arabidopsis thalianaaerialArraysCUC2tissue comparison,wt vs mutant comparison 16
Gnp07_Regeneome_embryo...somatic embryogenesisArabidopsis thalianacallusArraysembryogenesis wstissue comparison 6
Gnp07_Regeneome_embryo...somatic embryogenesisArabidopsis thalianacallusArraysembryogenesis col0tissue comparison 8
Gnp07_Regeneome_microd...Transcriptome bias induce by protocols used in microdissectionArabidopsis thalianaflowerArraysmicrodissection vs no microdissectiontreated vs untreated comparison 4
Gnp07_Regeneome_transd...transdifferentiation of Root Apical Meristem to Shoot Apical MeristemArabidopsis thalianarootsArraysmicrodissectiontime course 8
GNP07_RILKITTools to optimize the use of RIL populations, for natural diversity studies and QTL cloning
#PubMed:22453064
Arabidopsis thalianaaerialArraysRILKIT-eQTL analysis (random pair design)genotype and ecotype comparison 327
GnP10-01_GENOPEAGenopea 3.2
#PubMed:31440268
Pisum sativumcaulin leafArraysReproductive and Vegetative leavestime course,treated vs untreated comparison 30
GNP3-B4_Nitrogen_starv... Improving the nitrogen use efficiency : from model plant to crop species.
#PubMed:21900481
Arabidopsis thaliana, Brassica napusroots, rosetteArraysNitrogen starvation and re-supplytime course 22
GNP3_TRI33-ArabidoseedEstablishing the network of seed gene expression and analysis of its biodiversityArabidopsis thalianaseedArraysEmbryo seed developmenttime course 15
GNP3_TRI33-ArabidoseedEstablishing the network of seed gene expression and analysis of its biodiversityArabidopsis thalianaseed, silique and seedArraysSeed specific genesorgan comparison 3
GNP3_TRI33-ArabidoseedEstablishing the network of seed gene expression and analysis of its biodiversityArabidopsis thalianasilique and seedArrayseQTL analysis (random pair design)genotype and ecotype comparison 160
GNP3_TRI33-ArabidoseedEstablishing the network of seed gene expression and analysis of its biodiversityArabidopsis thalianasilique and seedArraysSeed developmenttime course 4
GNP3_TRI33-ArabidoseedEstablishing the network of seed gene expression and analysis of its biodiversityArabidopsis thalianaseedArraysPreliminary experiment:repetabilitygenotype and ecotype comparison 8
GnP_Blan06_TORPTENThe signalisation way TOR/PTEN in Arabidospsis.
#PubMed:22307851
Arabidopsis thalianaseedlingArraysRNAi Tor time coursenormal vs rnai mutant comparaison 24
GnP_Blan06_TORPTENThe signalisation way TOR/PTEN in Arabidospsis.Arabidopsis thalianaaerialArraysLST8gene knock out 8
GnP_Blan06_TORPTENThe signalisation way TOR/PTEN in Arabidospsis.Arabidopsis thalianaflowerArraysOverexpression of pten2agene knock in (transgenic) 6
NO27_Iron_signaling Transcriptomic response to iron signalingArabidopsis thalianacell culture/primary cellArraysIron responsetime course 7
PC_ARCOLENitrogenous nutrition efficiency of canola in spring : identification of targets for plant breedingArabidopsis thalianaaerialArraysARCOLE / PGPRdose response,organ comparison,treated vs untreated comparison 12
PC_GeBPGPL_transcripto...GeBP/GPL quadruple mutant and GPL2:VP16 transcriptomicArabidopsis thalianawhole plantArraysGrowth on MS of quadruple and GPL2:VP16gene knock in (transgenic),gene knock out 12
RA03-02_Potyvirus Transcriptional analysis of Arabidopsis thaliana infected by a potyvirus.Arabidopsis thalianarosetteArraysPotyvirusnormal vs disease comparison 4
RA03-03_ProtoplastFrom protoplast to plant : transcriptome profiling from cell division to differentiation in Arabidopsis thalianaArabidopsis thalianaaerial, cell culture/primary cell, protoplast, seedlingArraystranscriptome profiling from a protoplast culture of arabidopsis thalianatime course 15
RA03-04_Elongation_iso...Transcriptome analysis of the hypocotyl growth switch
#PubMed:20819179
Arabidopsis thalianawhole plantArraysplant germinationtime course 3
RA03-04_Elongation_iso...Transcriptome analysis of the hypocotyl growth switchArabidopsis thalianahypocotylArraysIsoxaben treatmenttreated vs untreated comparison 4
RA03-04_Elongation_iso...Transcriptome analysis of the hypocotyl growth switchArabidopsis thalianahypocotylArraysTime coursetime course 4
RA03-05_Clubroot Deciphering the Arabidopsis mechanisms of resistance to clubroot (Plasmodiophora brassicae) by differential analysis of transcriptome.
#PubMed:23420032
Arabidopsis thalianawhole plantArraysClub root responsenormal vs disease comparison,time course 12
RA03-05_ClubrootDeciphering the Arabidopsis mechanisms of resistance to clubroot (Plasmodiophora brassicae) by differential analysis of transcriptome.Arabidopsis thalianaroots, whole plantArraysClubroot CATMA-2organ comparison 8
RA03-06_Seed_endotheli...Transcriptome analysis of the tannin-producing cells in ArabidopsisArabidopsis thalianaseedArraysEndotheliumgene knock out 17
RA03-07_TOR Transcriptome analysis of TOR (Target of Rapamycin) mutant.Arabidopsis thalianarootsArraysTORtreated vs untreated comparison,wt vs mutant comparison 29
RA03-07_TORTranscriptome analysis of TOR (Target of Rapamycin) mutant.Arabidopsis thalianarootsArraysTOR_RNAiwt vs mutant comparison 8
RA04-01_msilIdentification of genes induced by fertilizationArabidopsis thalianasilique and seedArraysmsilwt vs mutant comparison 4
RA04-02_AGOTranscriptome of the argonaute (ago) mutantArabidopsis thalianahypocotylArraysAGOgene knock out 16
RA04-03_Nin7atnin7-1 (atnlp7) in two different nitrogen conditions.
#PubMed:18826430
Arabidopsis thalianaroots, rosetteArraysNin7gene knock out 14
RA04-04_NRT2.4NRT2.4 NO3 transport mutant.Arabidopsis thalianaroots, rosetteArraysNRT2.4gene knock out 4
RA04-05_NO3-seed-dorma...Nitrate control of Arabidopsis seed dormancy
#PubMed:19074630
Arabidopsis thalianaseedArraysdry seedstreated vs untreated comparison 6
RA04-05_NO3-seed-dorma...Nitrate control of Arabidopsis seed dormancyArabidopsis thalianaseedArrayssiliquestreated vs untreated comparison 3
RA04-05_NO3-seed-dorma...Nitrate control of Arabidopsis seed dormancyArabidopsis thalianaseedArrayssoaked seedstreated vs untreated comparison 9
RA04-06_PIIStudy of PII mutant, a sensor of carbon and/or nitrogen status protein
#PubMed:16545809
Arabidopsis thalianaaerialArraysNH4wt vs mutant comparison 8
RA04-06_PIIStudy of PII mutant, a sensor of carbon and/or nitrogen status proteinArabidopsis thalianaaerialArrays0-nitrogenwt vs mutant comparison 4
RA04-06_PIIStudy of PII mutant, a sensor of carbon and/or nitrogen status proteinArabidopsis thalianaaerialArrays1mM NO3wt vs mutant comparison 4
RA04-07_PGPR Arabidopsis thaliana transcriptome analysis in response to plant growth promoting rhizobacteria (PGPR).
#PubMed:18184068
Arabidopsis thalianaroots, rosetteArraysProfiling of the root architecture response to Phyllobacteriumtreated vs untreated comparison 4
RA04-07_PGPRArabidopsis thaliana transcriptome analysis in response to plant growth promoting rhizobacteria (PGPR).Arabidopsis thalianarosetteArraysProfiling of the PGPR induced systemic resistance (ISR)normal vs rnai mutant comparaison,treated vs untreated comparison 4
RA04-07_PGPRArabidopsis thaliana transcriptome analysis in response to plant growth promoting rhizobacteria (PGPR).Arabidopsis thalianarosetteArraysTrancriptional response to 3 rhizobacteriatreated vs untreated comparison 4
RA04-08_SenescenceTranscriptomic analysis of leaf senescence in Arabidopsis thaliana.
#PubMed:17098848
Arabidopsis thalianarosetteArraysSugars and leaf senescencetreated vs untreated comparison 12
RA04-08_SenescenceTranscriptomic analysis of leaf senescence in Arabidopsis thaliana. Arabidopsis thalianarosetteArraysIsogenic linesnear isogenic lines (hif) 2
RA05-01_EthyleneStudy of the ethylene respons in plants.Cellular elongation in the root and ethylene.
#PubMed:23134674
Arabidopsis thalianarootsArraysACC-treated root vs. control roottreated vs untreated comparison 6
RA05-02_Erwinia Regulation of the Arabidopsis transcriptome by the type three secretion system (TTSS) of Erwinia amylovora
#PubMed:22316300
Arabidopsis thalianarosetteArraysErwinianormal vs disease comparison 12
RA05-03_SGSTranscriptome analysis of two mutants rdr6/sgs2 and sgs3 impaired in post-transcriptional gene silencing (PTGS)Arabidopsis thalianaflower, rosetteArraysSGS2_and_3gene knock in (transgenic) 20
RA05-04_MeiocytesTranscriptomic of meiocytes.
#PubMed:21815983
Arabidopsis thalianameiocyte, roots, rosette, stamenArraysMeiocyte transcriptomeorgan comparison 12
RA05-04_MeiocytesTranscriptomic of meiocytes.Arabidopsis thalianarosette, stamenArraysMeiocytestotal transcriptome knowledge 2
RA05-05_Procuste Identification of genes involved in cell wall integrity signalling in Arabidopsis dark-grown hypocotyls
#PubMed:17540573
Arabidopsis thalianawhole plantArraysTranscriptome Analysis of prc1 or the1 and prc1_the1gene knock out 8
RA05-06_LIFLIF: Comparisons of transcritomic profils betweeen related mutants.
#PubMed:21304947
Arabidopsis thalianaaerialArraysLIFgene knock in (transgenic),organ comparison 32
RA05-07_Stifenia Effects of Stifenia pretreatment on Arabidopsis thaliana resistance against Fusarium oxysporum pv rafaniArabidopsis thalianarosetteArraysStifeniatreated vs untreated comparison 8
RA05-08_SeaweedSeaweed extract impact on plant growth and nitrogen metabolism. Arabidopsis thalianaroots, rosetteArraysSeaweed extract and hydroponically grown Arabidopsis plantstreated vs untreated comparison 12
RA05-09_Urea Urea impact on the nitrogen metabolism of plant and on the nitrogen transport systems
#PubMed:18508958
Arabidopsis thalianaroots, rosetteArraysUreatreated vs untreated comparison 12
RA05-10_NRT2.7atnrt2.7 v and atnrt2.7 s in a low and high nitrogen regime.Arabidopsis thalianaaerial, rootsArraysatnrt2.7gene knock out 16
RA05-11_CMSRapeseedComparing nuclear gene expression in two CMS-systems using microarray technologyBrassica napusflowerArraysCMS4:19 and At Chr3wt vs mutant comparison 16
RA05-11_CMSRapeseedComparing nuclear gene expression in two CMS-systems using microarray technologyBrassica napusflowerArraysRfPPRwt vs mutant comparison 6
RA05-12_NAR2Atnar2.1-1 response to transfer on low nitrate conditionArabidopsis thalianaaerial, rootsArraysatnar2.1-1dose response,gene knock out 16
RA06-02_StayGreen Eskimo gene characterisation.
#PubMed:19061521
Arabidopsis thalianarosetteArraysDrought and salt stress responsegene knock out,treated vs untreated comparison 14
RA06-03_DspA-Erwinia Regulation of the Arabidopsis transcriptome by the type three effector DspA/E of Erwinia amylovora.Arabidopsis thalianarosetteArraysDspA/E of Erwinia amylovorawt vs mutant comparison 10
RA06-04_BOS1 BOS1 signaling pathway in Arabidopsis thaliana / Erwinia chrysanthemi interactionArabidopsis thalianaaerialArraysErwinia chrysanthemi treatmentsnormal vs disease comparison 21
RA06-05_Potyvirus-Ecot... Transcriptionnal response to potyviruses infection in ArabidopsisArabidopsis thalianarosetteArraysArabidopsis ecotypesnormal vs disease comparison 12
RA06-05_Potyvirus-Ecot...Transcriptionnal response to potyviruses infection in ArabidopsisArabidopsis thalianarosetteArraysPotyvirus effectnormal vs disease comparison 10
RA07-01_PRX34Modifications of transcriptome in primary floral stem of Arabidopsis thaliana deregulated for a peroxydase involved in the lignification.Arabidopsis thalianastemArraysPrimary Floral Stem 40cmnormal vs transgenic comparaison 3
RA07-01_PRX34Modifications of transcriptome in primary floral stem of Arabidopsis thaliana deregulated for a peroxydase involved in the lignification.Arabidopsis thalianastemArraysPrimary Floral Stem 20cmnormal vs transgenic comparaison 6
RA07-02_ABA2Analysis of the role of maternal and embryonic ABA in seeds.Arabidopsis thalianaseedArraysMaternal/embryonic ABA-1gene knock out,treated vs untreated comparison 8
RA07-03_ABA4Analyse of arabidopsis mutants and transforming affected in the synthesis of abscissic acid.Arabidopsis thalianaaerialArraysABA4/1gene knock in (transgenic),gene knock out 8
RA07-05_MYB82Fonctionnal caracterization of the transcription factor VvMYB82Arabidopsis thalianaflowerArraysfonctional caracterization of VvMYB82wt vs mutant comparison 4
RA08-01_CPL1Transcriptome analysis of fry2 mutants.Arabidopsis thalianawhole plantArraysTranscriptome analysis of fry2 mutantsgene knock out 8
RA08-02_Clavata-Ralsto...Studies of two mutants for clavata genesArabidopsis thalianawhole plantArraysClavata-Ralstoniawt vs mutant comparison 12
RA08-03_KimDifferential expression in laccase mutants of Arabidopsis thalianaArabidopsis thalianastemArraysLaccaseswt vs mutant comparison 11
RA09-01_QTLleafgrowthStudying the transcriptional consequences of a QTL for shoot growth (SG3, SG1). Studying the transcriptional consequences of a QTL for shoot growth under mannitol condition (EGO3).
#PubMed:24479634
Arabidopsis thalianaaerialArraysEGO3genotype comparaison 4
RA09-01_QTLleafgrowthStudying the transcriptional consequences of a QTL for shoot growth (SG3, SG1). Studying the transcriptional consequences of a QTL for shoot growth under mannitol condition (EGO3). Arabidopsis thalianaaerialArraysSG1-SG3genotype comparaison 8
RA09-02_TCTPTranscriptomic analyses approach to identify genes associated with organ growth downstream TCTP in ArabidopsisArabidopsis thalianarosetteArraysOver Expressiongene knock in (transgenic) 4
RA09-02_TCTPTranscriptomic analyses approach to identify genes associated with organ growth downstream TCTP in ArabidopsisArabidopsis thalianarosetteArraysRNAinormal vs rnai mutant comparaison 4
RA09-02_TCTPTranscriptomic analyses approach to identify genes associated with organ growth downstream TCTP in ArabidopsisArabidopsis thalianarosetteArraysknockoutgene knock out 4
RA09-03_SGSTranscriptome analysis of mutants impaired in post-transcriptional gene silencing (PTGS).Arabidopsis thalianaaerialArraysmutants versus wtgene knock in (transgenic) 16
RA10-01_LaccasesDifferential expression in laccase mutants of Arabidopsis thaliana
#PubMed:21447792
Arabidopsis thalianastemArraysLaccase mutationsnormal vs knock out comparison 12
RA10-02_ViromouvAnalysis of the genic expression modifications of Arabidopsis Companion cells infected by plants virusesArabidopsis thalianaprotoplast,rosetteArraysViromouvnormal vs disease comparison 12
RA10-03_EliciteurEffect of oligosaccharide treatments on gene expression.Arabidopsis thalianarosetteArraysOligosaccharide treatment - 24 hpttreated vs untreated comparison 36
RA10-04_RootsRoot molecular responses of nitrate transporter mutantsArabidopsis thalianarootsArraysWS vs Clca2/35A2/352.7gene knock out,genotype comparaison,normal vs transgenic comparaison 16
RA11-01_prghTranscriptomic analysis of Arabidopsis genes after treatment with Salmonella 14028s and Salmonella type three secretion system (T3SS) mutant prgh
#PubMed:24198231
Arabidopsis thalianawhole plantArrayscomparison between Salmonella Wild type 14028s and Salmonella mutant prgh in Arabidopsis infection.time course,treated vs untreated comparison 30
RA11-04_QTLFunctional characterization of Shoot Growth 1 (Sg1)Arabidopsis thalianawhole plantArraysStudy of the transcriptional consequences of a growth QTL candidate (Sg1)gene knock out 6
RA12-01_mut_flgFLG-OoPTIMICEArabidopsis thalianarosetteArraysINRA12-01_mut-flggene knock in (transgenic) 30
RA12-03_Raptor-NaClResponse to salt stress of Raptor mutantsArabidopsis thalianawhole plantArraysResponse to salt stress of Raptor mutantsgene knock out,treated vs untreated comparison 6
RA12-05_mut_flg_IIFLG-MPKs
#PubMed:24980080
Arabidopsis thalianawhole plantArraysINRA12-05_mut_flg_IIgene knock out,normal vs mutant comparison,treated vs untreated comparison 24
RA12-06_myb118Identification of genes misregulated in developing seeds of Arabidopsis in response to the myb118 mutation.
#PubMed:25194028
Arabidopsis thalianaseedArraysmyb118 mutationnormal vs transgenic comparaison 8
RA14-02_mkk3-ABAMKK3-ABAArabidopsis thalianaseedlingArraysIdentification of the miss-regulated genes in mkk3 under ABA treatment.gene knock out,treated vs untreated comparison 12
RA14-04_ncedABA signaling in Arabidopsis seeds
#PubMed:30948555
Arabidopsis thalianaseedArraysABAseedgene knock out,genomic comparison 9
RA14-05_MultipassMULTIPASS
#PubMed:30373239
Arabidopsis thalianaaerial,rosetteArraysEffect of N nutrition of Arabidopsis response to Erwinia infectionnormal vs disease comparison,treated vs untreated comparison 8
RA15-01_MYB92Identification of genes misregulated in developing seeds of Arabidopsis in response to the myb92 mutation and to MYB92 overexpression.Arabidopsis thalianaseedArraysIdentification of genes misregulated to myb92 mutant and MYB92 OE.gene knock in (transgenic),gene knock out,normal vs transgenic comparaison 6
RA15-03_OXPMT7-7Impact of Brachypodium acyl-transferases.Arabidopsis thalianastemArraysAcyltransferase Brachypodium-Arabidopsisnormal vs transgenic comparaison 6
RA15-04_ELIM1Identification of genes differentiallty expressed in mur1 basal stems
#PubMed:28961242
Arabidopsis thalianastemArraystranscription of ectopic lignificationgenotype comparaison 6
RA15-06_OXMYC4AtMYC4 overexpression in Arabidopsis (ws)Arabidopsis thalianastemArraysAtMYC4 overexpression in Arabidopsis (ws)normal vs transgenic comparaison 6
RA15-07_BurxCol_465RA15-07_BurxCol_465Arabidopsis thalianacaulin leafArraysBurxCol-465gene knock out 4
RA16-01_MKK3_woundingIdentification of MKK3-dependent wonding-induced genesArabidopsis thalianaaerialArraysIdentification of MKK3-dependent wonding-induced genesgene knock out,genotype comparaison,normal vs transgenic comparaison,treated vs untreated comparison 12
RA16-03_ROTENONEEffect of the inhibition of the mitochondrial respiratory chain complex I (CI) on shoot initiation on protoplast-derived calliArabidopsis thalianacell culture/primary cellArraysRotenone_Complex I mutantsgene knock out,genotype and ecotype comparison,time course 12
RA16-03_ROTENONEEffect of the inhibition of the mitochondrial respiratory chain complex I (CI) on shoot initiation on protoplast-derived calliArabidopsis thalianacallusArraysRotenonetime course,treated vs untreated comparison 18
RA16-04_3WD40Gene disruption in a triple WD40 mutant.Arabidopsis thalianastemArraysStem transcriptome in a triple WD40 mutant.genotype comparaison 4
RS03-01_Onc6bTranscriptome alterations by the 6b oncogene of AgrobacteriumArabidopsis thalianarosetteArraysDex-GVGgene knock in (transgenic) 2
RS03-01_Onc6bTranscriptome alterations by the 6b oncogene of AgrobacteriumArabidopsis thalianarosetteArraysOncogene_effectgene knock in (transgenic) 6
RS03-02_Phospholipases Identification of genes induced with the cold via the ways of indication of the phospholipases C and D.
#PubMed:16258011
Arabidopsis thalianacell culture/primary cellArraysPhospholipases 22°Ctreated vs untreated comparison 15
RS03-02_PhospholipasesIdentification of genes induced with the cold via the ways of indication of the phospholipases C and D. Arabidopsis thalianacell culture/primary cellArraysPhospholipases 4°Ctreated vs untreated comparison 18
RS04-01_CytCThe cytochrome pathway and cytochrome C biogenesisArabidopsis thalianarosetteArraysCCMEgene knock in (transgenic) 5
RS04-01_CytCThe cytochrome pathway and cytochrome C biogenesisArabidopsis thalianacell culture/primary cellArraysAntimycine Atreated vs untreated comparison 5
RS04-02_NTRTranscriptomic study of a thioredoxin reductase knock-out mutant.
#PubMed:19825611
Arabidopsis thalianawhole plantArraysNTRgene knock out,wt vs mutant comparison 6
RS04-04_SKP2_CUL4Functional analysis of the SKP2 and CUL4 proteinsArabidopsis thalianawhole plantArrayscomparison_Cul4_As_dark_lightgene knock out,normal vs antisens mutant comparison 12
RS04-04_SKP2_CUL4Functional analysis of the SKP2 and CUL4 proteinsArabidopsis thalianawhole plantArrayscomparison_Cul4_As_lightgene knock out,normal vs antisens mutant comparison 9
RS04-04_SKP2_CUL4Functional analysis of the SKP2 and CUL4 proteinsArabidopsis thalianacotyledonsArrayscomparison_Col0vsSKP2wt vs mutant comparison 6
RS04-05_Nickel Effect of nicotianamine over-accumulation in standard condition and in response to nickel treatmentArabidopsis thalianaaerialArraysNickel_Leafgene knock in (transgenic),organ comparison 2
RS04-05_NickelEffect of nicotianamine over-accumulation in standard condition and in response to nickel treatmentArabidopsis thalianarootsArraysNickel_Rootgene knock in (transgenic) 4
RS04-06_CDT1Characterization of the AtCDT1a and AtCDT1b by RNAiArabidopsis thalianaaerialArraysCDT1normal vs rnai mutant comparaison 4
RS04-07_Set-1Functional analysis of protein SET in Arabidopsis
#PubMed:17122067
Arabidopsis thalianawhole plantArraysComparison WT-set mutants normal vs rnai mutant comparaison 8
RS04-08_NtKisCKI role in plant development Arabidopsis thalianawhole plantArraysNt-Kisgene knock in (transgenic) 4
RS04-09_hahb4 Identification of targets of the transcription factor hahb-4 in relation to abiotic stress
#PubMed:16972869
Arabidopsis thalianaaerialArraysWater stressgene knock in (transgenic),treated vs untreated comparison 8
RS04-10_Oxydative--str... Involvement of small non coding RNAs in Arabidopsis responses to oxidative stress Arabidopsis thalianacell culture/primary cellArraystime course H2O2 traitementtreated vs untreated comparison 8
RS05-04_salicylic-acidRole of phosphatidylinositol 4-kinase
#PubMed:17496105
Arabidopsis thalianacell culture/primary cellArraysModification of response to salicylic acid by wortmannin treatmentdose response,treated vs untreated comparison 42
RS05-05_Atrazine Sucrose effects on xenobiotic tolerance in Arabidopsis thaliana, a CATMA study. Transcriptomic analysis of sucrose effects on xenobiotic tolerance in Arabidopsis thaliana.
#PubMed:18053238
Arabidopsis thalianawhole plantArraysEffect of atrazine and sucrose on Arabidopsis transcriptometreated vs untreated comparison 12
RS05-06_DGPPDGPP regulated genes. Identification of diacylglycerol pyrophosphate regulated genes in ABA signaling.Arabidopsis thalianacell culture/primary cellArraysDGPP - 2 treated vs untreated comparison 8
RS05-06_DGPPDGPP regulated genes. Identification of diacylglycerol pyrophosphate regulated genes in ABA signaling.Arabidopsis thalianacell culture/primary cellArraysDGPPtreated vs untreated comparison 18
RS05-07_NucleolinCharacterization of a nucleolin gene in Arabidopsis thaliana mutant lineArabidopsis thalianawhole plantArraysAnalysis of Atnuc-L1 mutant linegene knock out 4
RS05-08_NO Transcriptionnal impact of Cd-induced nitric oxide synthesis.
#PubMed:19168643
Arabidopsis thalianarootsArraysNOtreated vs untreated comparison 15
RS05-09_Histone-acetyl...Studies of the gene expression profil in the simple mutants gcn5 and hd1 and in the double mutant gcn5 hd1.
#PubMed:18644002
Arabidopsis thalianaaerialArraysGCN5gene knock out 4
RS05-09_Histone-acetyl...Studies of the gene expression profil in the simple mutants gcn5 and hd1 and in the double mutant gcn5 hd1. Arabidopsis thalianaaerialArraysGCN5_2gene knock in (transgenic) 3
RS05-10_AtrazineII Sucrose effects on xenobiotic tolerance in Arabidopsis thaliana, a CATMA study.Temporal analysis of sucrose effects on atrazine tolerance in Arabidopsis thaliana.
#PubMed:18053238
Arabidopsis thalianawhole plantArraysTime course analysis of atrazine and sucrose effectstime course,treated vs untreated comparison 21
RS05-11_HypocotylsPlant cell wall and development. Comparison of transcript levels between elongating (5 day-old) and elongated (11 day-old) etiolated hypocotyls.
#PubMed:19878582
Arabidopsis thalianahypocotylArraysHypocotylsorgan comparison 6
RS05-12_SetIIFunctional characterization of Arabidopsis NAP1/SET genes
#PubMed:18070919
Arabidopsis thalianawhole plantArraysall comparisongene knock out 15
RS05-12_SetIIFunctional characterization of Arabidopsis NAP1/SET genesArabidopsis thalianawhole plantArrayssdg25 and sdg26gene knock out 9
RS05-13_Hag4Homeostasie of histone acetylation and the control of transcription.Arabidopsis thalianarootsArraysTranscriptome of hag4 rootgene knock out 6
RS05-14_VDAC1Functions of AtVDAC1 and its partner p26 in Arabidopsis thaliana. Identification of genes involved in AtVDAC1 signalling pathway in response to salicylic acid. Arabidopsis thalianawhole plantArraysvdac1-p26gene knock out,treated vs untreated comparison 8
RS05-15_Iron_signaling Responses to iron excess in plants: identification of genes involved in iron homeostasisArabidopsis thalianacell culture/primary cellArraysRS05-15_Irontime course 7
RS05-16_KdoTAnalysis of an Arabidopsis Kdo transferase mutantArabidopsis thalianaaerialArraysAnalysis of an Arabidopsis Kdo transferase mutantgene knock out 2
RS06-01_PLDFonctional analysis of the double mutant phospholipasezeta1,2 in response to abiotic stressArabidopsis thalianawhole plantArraysPLDgene knock out,treated vs untreated comparison 48
RS06-03_Cd-miRNA cadmium stress on suspension cells. Arabidopsis thalianacell culture/primary cellArraysCadmium-miRNAtreated vs untreated comparison 8
RS06-04_wat1-1Transcriptomic analyses of the wat1-1 nodulin-like knock out mutant
#PubMed:20497379
Arabidopsis thalianaseedling, stemArrayswat1-1gene knock out,organ comparison 8
RS06-05_Arabinofuranos...Comparative analysis of mutant and overexpressor of the At3g10740 gene, alpha-L-arabinofuranosidase
#PubMed:18344421
Arabidopsis thalianastemArraysMutant vs WTgene knock out 2
RS06-05_Arabinofuranos...Comparative analysis of mutant and overexpressor of the At3g10740 gene, alpha-L-arabinofuranosidaseArabidopsis thalianastemArraysOverexpressor vs WTgene knock in (transgenic) 2
RS06-06_miRNA Gene profiling upon biotic stress treatment. Gene profiling in microRNA mutants. Gene profiling in siRNA mutants.
#PubMed:19802597
Arabidopsis thalianaseedlingArraysComparisons Wt-mutants 1 and 3gene knock out 8
RS06-06_miRNAGene profiling upon biotic stress treatment. Gene profiling in microRNA mutants. Gene profiling in siRNA mutants.Arabidopsis thalianaseedlingArraysFlg22 time coursetime course,treated vs untreated comparison 20
RS06-06_miRNAGene profiling upon biotic stress treatment. Gene profiling in microRNA mutants. Gene profiling in siRNA mutants.Arabidopsis thalianawhole plantArraysFlg22 treatment & mutants 2treated vs untreated comparison 12
RS06-06_miRNAGene profiling upon biotic stress treatment. Gene profiling in microRNA mutants. Gene profiling in siRNA mutants.Arabidopsis thalianaseedlingArraysFlg22 treatment & mutantstime course,total transcriptome knowledge 28
RS06-06_miRNAGene profiling upon biotic stress treatment. Gene profiling in microRNA mutants. Gene profiling in siRNA mutants.Arabidopsis thalianaseedlingArraysComparisons Wt-mutants 2 gene knock out 8
RS06-06_miRNAGene profiling upon biotic stress treatment. Gene profiling in microRNA mutants. Gene profiling in siRNA mutants.Arabidopsis thalianaseedlingArraysFlagellin experiment in dcl2-dcl3-dcl4 mutant backgroundtreated vs untreated comparison 12
RS06-06_miRNAGene profiling upon biotic stress treatment. Gene profiling in microRNA mutants. Gene profiling in siRNA mutants.Arabidopsis thalianaseed, stemArraysAgrobacterium treatmentnormal vs disease comparison,organ comparison 6
RS06-06_miRNAGene profiling upon biotic stress treatment. Gene profiling in microRNA mutants. Gene profiling in siRNA mutants.Arabidopsis thalianaseedlingArraysComparisons Wt-mutants 1gene knock out 6
RS06-06-miRNA_CaMV_tre... Gene profiling durinig CaMV infection. Arabidopsis thalianarosetteArraysCaMV treatmentgene knock out,normal vs disease comparison 7
RS06-07_DELLA DELLAs contribute to salt stress responses
#PubMed:18450450
Arabidopsis thalianaseedlingArraysDELLA-regulation of salt stress responsesdose response,gene knock out,time course 18
RS07-01_carnitine Effect of carnitine on the transcriptome of A. thaliana
#PubMed:21853252
Arabidopsis thalianaseedlingArrayscarnitine effecttreated vs untreated comparison 12
RS07-01_carnitineEffect of carnitine on the transcriptome of A. thalianaArabidopsis thalianaseedlingArraysTreatment g-butyrobetaine WT Col.0treated vs untreated comparison 4
RS07-02_npc48Analysis of npc48 overexpressing plants.Arabidopsis thalianarosetteArraysAnalysis of npc48 overexpressing plantsgene knock in (transgenic) 6
RS07-03_APCTranscriptome on Arabidopsis APC hypomorphic linesArabidopsis thalianawhole plantArraysAPC Transcriptomenormal vs rnai mutant comparaison 6
RS07-04_MIPSCell cycle and cell death interaction in plants : PCNA, AtXRs and AtMIPS pathway.
#PubMed:19812700
Arabidopsis thalianarosetteArraysAtMIPS mutant/photoperiodgene knock out 8
RS07-05_sphingolipids-... Identification of Sphingolipid regulated genes in cold stress response. Sphingolipids regulated genes.Arabidopsis thalianacell culture/primary cellArraysSphingo-1treated vs untreated comparison 24
RS07-06_PLC_cold_plant The effect of PLC inhibitor on cold responsive transcriptome.Arabidopsis thalianawhole plantArraysPLC_cold_planttreated vs untreated comparison 4
RS07-07_lpp2 Gene expression of lpp2 KO mutant in response to ABA.Arabidopsis thalianarosetteArraysABA-treated lpp2 mutant treated vs untreated comparison 8
RS07-08_GollumRole of the Gollum gene in the plant development
#PubMed:23639116
Arabidopsis thalianacaulin leaf, rosetteArraysTrancript profiling in Arabidopsis GOLLUM mutant.wt vs mutant comparison 6
RS07-09_BOUbou mutant characterisation. Autotrophic growth acquisition in the ABOUTDESOUFFLE (bou) mutant.
#PubMed:23181524
Arabidopsis thalianawhole plantArraysCATMA1-bougene knock in (transgenic),normal vs disease comparison,time course 10
RS08-01_Met2Involvement of non coding RNAs in the adaptation of root architecture to abiotic stressArabidopsis thalianaaerial, rootsArrayscomparative analysis of CATMA chips with a MET2 overexpression lineorgan comparison,wt vs mutant comparison 8
RS08-02_NadAnalysis of the effect of NAD concentration on the transcriptome.Arabidopsis thalianarosetteArraysDark and Lighttreated vs untreated comparison 12
RS08-03_GlutathionInteractions between H2O2 and glutathion in gene expression.
#PubMed:20488891
Arabidopsis thalianarosetteArraysGlutathiongene knock out 24
RS08-04_wat1-RalstoniaCaracterisation of wat1 mutantArabidopsis thalianaroots, rosetteArraysmutant comparisonwt vs mutant comparison 12
RS08-04_wat1-RalstoniaCaracterisation of wat1 mutantArabidopsis thalianaroots, rosetteArraysRalstonia infectiontreated vs untreated comparison 40
RS08-05_BAC2 bac2 mutant transcriptome modification during osmotic stressArabidopsis thalianarosetteArraysBAC2-CATMAgene knock out,treated vs untreated comparison,wt vs mutant comparison 8
RS09-01_Det1Expression profile of DET1-1 mutant during photomorphogenesisArabidopsis thalianaseedlingArraysphotomorphogenesistreatment variations 10
RS09-02_Quinolinate Deregulation of NAD biosynthesis
#PubMed:22268572
Arabidopsis thalianarosetteArraysQuinolinatetreated vs untreated comparison,wt vs mutant comparison 8
RS09-03_ZF1NoneArabidopsis thalianarosetteArraysZF1 experimentnormal vs transgenic comparaison 6
RS09-04_PLC_2 PI4-kinase and phospholipase C signaling in cold response
#PubMed:23964284
Arabidopsis thalianacell culture/primary cellArraysEdelfosine and wortmannin effect at 22°C and 4°Ctreated vs untreated comparison 13
RS09-06_Silencing-Munt...Transcriptome analysis of silencing mutants and endogenous hairpin KO insertion.Arabidopsis thalianaseedlingArraysSilencing Mutantsgenotype comparaison 13
RS09-07_HB6Role of HB6 in plant developmentArabidopsis thalianaseedlingArraysHB6wt vs mutant comparison 9
RS09-08_FIEDissecting the role of the polycomb repressory complex in Arabidopsis: Characterisation of PRC2 mutant
#PubMed:21423668
Arabidopsis thalianawhole plantArraysupregulation of transcripts in the absence of PRC2 repressory complexgene knock out 10
RS09-09_DELLA-darkDELLAs contribute to skotomorphogenesis
#PubMed:21571951
Arabidopsis thalianawhole plantArraysDELLA-regulation in darkness versus lightgene knock out 15
RS09-10_FWADNA methylation and small RNAsArabidopsis thalianarosette, seedlingArrayswt vs mutants 09 fwa-d,gain of fuction epimutation,gene knock in (transgenic),gene knock out 14
RS09-10_FWADNA methylation and small RNAsArabidopsis thalianaseedlingArraysoct07gene knock out 8
RS10-01_RRMTranscriptomic study of a quadruple rrm mutant which belong to a new family of AGO hook proteins at Arabidopsis thalianaArabidopsis thalianarosetteArraysQuadruple RRM experiencenormal vs transgenic comparaison 4
RS10-02_ros_dmeGenetic dissection of endosperm development
#PubMed:21423668
Arabidopsis thalianaseedArraysGenes regulated by ROS and DMEgene knock out 8
RS10-03_INDTranscriptome profiling upon induction of the transcription factor INDArabidopsis thalianaseedlingArraysComparison of IND induced vs mock treated seedlingsinduced vs non-induced comparison 6
RS10-04_MADTranscriptome analysis of miRNA action deficient mutantsArabidopsis thalianaseedlingArraysComparison of transcriptomes in mad mutantsgenotype comparaison 12
RS10-05_TCVGene profiling of Turnip Crinkle Virus (TCV) siRNA in A.thalianaArabidopsis thalianarosetteArraysGene profiling of Turnip Crinkle Virus (TCV) siRNAgene knock out,treated vs untreated comparison 21
RS10-06_CDKAcdka mutants Arabidopsis thalianaaerialArrayscdka mutantswt vs mutant comparison 12
RS11-01_NADNAD biosynthesis in Arabidopsis : role of quinolinate phosphoribosyltransferaseArabidopsis thalianarosetteArraysKnock Out Mutant N575260gene knock out 4
RS11-02_OpineImpact of genetically modified plants on bacteria from rhizosphereArabidopsis thalianawhole plantArraysSeptante projectnormal vs transgenic comparaison 9
RS11-03_AgroQuorum-sensing in Agrobacterium-induced tumors
#PubMed:26714842
Arabidopsis thalianastemArraysTranscriptomic comparison of tumoric tissues induced by different C58 Agrobacterium linesinfected vs non infected tissue comparison 21
RS11-07_Opine2Septante2Arabidopsis thalianastemArraysSeptante soilnormal vs transgenic comparaison 9
RS11-08_NAD2Regulation of NAD biosynthesis in Arabidopsis : role of quinolinate phosphoribosyltransferase.Arabidopsis thalianarosetteArraysDown regulation of QPTgene in Arabidopsisnormal vs transgenic comparaison 4
RS11-09_MeoticTime course of meiotic gene expression in ArabidopsisArabidopsis thalianaaerialArraysTime course expression profile of ap1-cal after induction of an AP1-transgenetime course 15
RS11-10_URT1Transcriptome comparison between WT and a mutant impaired in RNA uridylation.Arabidopsis thalianarosetteArraysLeaf transcriptome comparison between wt and URT1 (SALK_087647) gene knock out 6
RS11-11_Myb52Transcriptome analysis of atmyb52 mutant vs wild-typeArabidopsis thalianastemArraysMYB52-2 T-DNA normal vs transgenic comparaison 4
RS12-03_Complex-IAnalysis of complex I mutantsArabidopsis thalianaseedlingArraysComplex Igene knock out 15
RS12-04_RNAnonPolyAANR MITOMANIP
#PubMed:31200566
Arabidopsis thalianawhole plantArraysnad9 knockdown 1trans-ribozyme-mediated knockdown of a specific mitochondrial rna 4
RS12-06_A9-MrNonPolyAANR MITOMANIPArabidopsis thaliana, Cephalanthera damasoniumwhole plantArraysmatR knockdown 1trans-ribozyme-mediated knockdown of a specific mitochondrial rna 12
RS12-07_PNM1CNRS12-07_PNM1Arabidopsis thalianarosetteArraysLeaf transcriptome comparison between wt and PNM1DNLS plants normal vs transgenic comparaison 4
RS12-08_cyp715A1Genome-wide transcriptional analysis of cyp715A1
#PubMed:26388305
Arabidopsis thalianaflower budArraysCol-0 vs cyp715A1gene knock out,genotype comparaison 6
RS13_01_LAODown/up regulation of NAD biosynthesis in Arabidopsis : role of L-Aspartate oxidase Arabidopsis thalianarosetteArraysDown/up regulation of NAD biosynthesis in Arabidopsis and role of L-Aspartate oxidasegenotype comparaison 8
RS13-02_MitomanipANR MITOMANIP
#PubMed:31200566
Arabidopsis thalianawhole plantArraysMitomanip microarray experiment 4time course,trans-ribozyme-mediated knockdown of a specific mitochondrial rna vs control 30
RS14-01_Mitomanip2ANR MITOMANIPArabidopsis thalianawhole plantArraysMicroarray experiment 4time course 20
TIL-Ath-2011_3HEN2 is a cofactor of the nuclear exosome in Arabidopsis
#PubMed:25144737
Arabidopsis thalianawhole plantArraystiling hen2 and mtr4gene knock out,genotype comparaison,normal vs transgenic comparaison 6
TRI33-LEC1Establishing the network of seed gene expression and analysis of its biodiversity
#PubMed:22429691
Arabidopsis thalianawhole plantArraysWT Dex Inductiontreated vs untreated comparison 6
TRI33-LEC1Establishing the network of seed gene expression and analysis of its biodiversity Arabidopsis thalianawhole plantArraysLEC1::GR Inductiontreated vs untreated comparison 8
TRI38-LAR Transcriptomic analysis of the localized acquired resistance phenomenon (LAR) in Arabidopsis Thaliana.Arabidopsis thalianarosetteArraysLARnormal vs disease comparison 6
TRI38-LARTranscriptomic analysis of the localized acquired resistance phenomenon (LAR) in Arabidopsis Thaliana.Arabidopsis thalianarosetteArraysHRnormal vs disease comparison 2
ProjectTitleOrganismOrgans/TissuesTechnologyExperiment NameExperiment TypeNb Samples
ProjectTitleOrganismOrgans/TissuesTechnologyExperiment NameExperiment TypeNb Samples
AAP_BAP_NitroPath_2014Nitrogen nutrition and pathogen susceptibility: priming by metabolism.
#PubMed:32939948
Arabidopsis thalianarosetteRNA-SeqBotrytisxNnormal vs disease comparison 32
CAT-seqComparative Arabidopsis Transcriptome -Sequencing
#PubMed:27742662
Arabidopsis thalianaaerial, flower budRNA-SeqRNA-Seq partorgan comparison 4
JC2013_SYBIOPOP_2014Sybiopop: A systems biology approach to improve poplar biorefinery feedstock by deciphering the genetic architecture of lignocellulosic biomass production and quality
#PubMed:30541448, 32571208
Populus nigracambium,xylemRNA-SeqValidation of pilot transcriptomic studygenotype and ecotype comparison 24
JC2013_SYBIOPOP_2014Sybiopop: A systems biology approach to improve poplar biorefinery feedstock by deciphering the genetic architecture of lignocellulosic biomass production and qualityPopulus nigracambium,xylemRNA-SeqLarge genotype and population comparisons in Populus nigragenotype and ecotype comparison 459
JC2013_SYBIOPOP_2014Sybiopop: A systems biology approach to improve poplar biorefinery feedstock by deciphering the genetic architecture of lignocellulosic biomass production and qualityPopulus nigracambium,xylemRNA-SeqPilot transcriptomic studygenotype and ecotype comparison 24
NGS2012_02_MicroDDilutionArabidopsis thalianaseedRNA-SeqNGS micro D-2null 6
NGS2013_04_NodTranscriptomic response to Nod Factor treatments on MedicagoMedicago truncatularootsRNA-SeqTranscriptomic analysis of Medicago root hairs treated vs untreated comparison 6
NGS2013_07_PcapsiciFFECAPS project: Phytophthora capsici Illumina RNAseq transcriptome of two isolates, one adapted to pepper, another non adapted, in two pepper accessions, one partially resistant and one susceptible to Phytophthora capsiciCapsicum annuum L.stemRNA-SeqEFFECAPS-Phytophthora capsicigenotype comparison,treated vs untreated comparison 24
NGS2014_01_MicroDNone
#PubMed:29434651
Arabidopsis thalianaseedRNA-SeqNGS micro D-1organ comparison 8
NGS2014_07_HeveaRNAseq analysis of latex samples from healthy and Tapping Panel Dryness-affected trees.
#PubMed:29855601
Hevea brasiliensislatexRNA-SeqHevea_TPD-seqgenotype comparaison,normal vs disease comparison 21
NGS2014_10_EpsilonTranscriptomic changes associated with DNA pol epsilon deficiency
#PubMed:27193996
Arabidopsis thalianaseedlingRNA-SeqTranscriptome deficient mutants for the epsilon DNA polymerasenormal vs transgenic comparaison 12
NGS2014_21_SeedComSeedcom
#PubMed:32086366
Zea maysaleurone, embryo, embryo surrounding region, endosperm, pericarp, scutellumRNA-SeqRNA-seq Seedcomorgan comparison 24
NGS2014_39_LeafNet2Dynamic and specificity of CUP-SHAPED COTYLEDON transcription factors during leaf development
#PubMed:35575098
Arabidopsis thalianaseedlingRNA-SeqCUC2-identificationtreated vs untreated comparison 6
NGS2015_01_TransitionTranscriptome of floral transition
#PubMed:30971226
Arabidopsis thalianarosetteRNA-SeqTransitiontime course 12
NGS2015_05_HIGH_TEMPER...High temperature Arabidopsis root transcriptome
#PubMed:28827608
Arabidopsis thalianarootsRNA-SeqHigh Temp WT treated vs untreated comparison 7
NGS2015_12_ZeaWall2ZeaWall2
#PubMed:31891625
Zea maysinternodeRNA-SeqZeaWall2allele,genomic comparison 10
NGS2015_19_ANR-JC-BRAV...Brachypodium Vascular ontogeny
#PubMed:33892630
Brachypodium distachyonmeristemRNA-SeqMicrodissection data of 3 vascular bundles stagestime course,tissue differentiation 12
NGS2016-07-ASCOncRNASplicing regulation by the lncRNA ASCO
#PubMed:32285620
Arabidopsis thalianaseedlingRNA-SeqSplicing regulation by the lncRNA ASCO normal vs rnai mutant comparaison,normal vs transgenic comparaison 9
NGS2016_08_DYW2DYW2_OTP100
#PubMed:28760958
Arabidopsis thalianaflower bud,rosette,stemRNA-SeqDYW2gene knock out 12
NGS2016_10_DormancyDormancy Release by phosphorylation
#PubMed:31325184
Arabidopsis thalianaseedRNA-SeqRNA seq on mpk8 and tcp14 mutants on dry and imbibited seedsgene knock out 18
NGS2017_08_BrasiliceEffect of silicon (Si) supply on lef and root transcriptomes
#PubMed:30820649
Brassica napusaerial, rootsRNA-SeqTransilicetreated vs untreated comparison 12
NGS2017_09_MOSS1The goal of this study is to identify genes whose expression is affected by decapitation and auxin in moss gametophores
#PubMed:35841890
Physcomitrella patensstemRNA-SeqAUXIN_DECAPITUATION_2exptreated vs untreated comparison 24
NGS2017_11_ROSEX2Project 1 : VeRo : Vernalisation Rose (Genetic and epigenetic control of flowering in Rosa Wichuraiana) Project 2 : Sucre-Auxine_Rose
#PubMed:33543244
Rosa hybrida flower budRNA-SeqAuxin sugar antagonist effect on budburst treated vs untreated comparison 12
NGS2017_11_ROSEX2Project 1 : VeRo : Vernalisation Rose (Genetic and epigenetic control of flowering in Rosa Wichuraiana) Project 2 : Sucre-Auxine_RoseRosa chinensisflower budRNA-SeqCold Responsedose response,time course 6
NGS2017_12_DDM1Hypomethylation and drought stress on transcriptome
#PubMed:34128549
Populus tremula x Populus albashoot apexRNA-SeqNGS2017_12_DDM1normal vs rnai mutant comparaison 6
NGS2018_05_TORAnalysis of Arabidopsis mutants TOR/LST8/MAKTOR
#PubMed:31216485
Arabidopsis thalianawhole plantRNA-SeqAnalysis of Arabidopsis mutants TOR/LST8/YAK1/MAKTORgene knock out 18
NGS2018_10_EthyleneRNA-seq ± Ethylene
#PubMed:33020928
Arabidopsis thalianaseedRNA-Seqeffect of ethylene RNA-seqtreated vs untreated comparison 21
NGS2018_11_nlp2Study of the primary nitrate response (PNR) in nlp2 mutant and WT
#PubMed:36752317
Arabidopsis thalianaseedlingRNA-SeqNo treatment / Nitrate starvation / Nitrate inductionnormal vs mutant comparison,treated vs untreated comparison 18
NGS2019_18_EplusEplus
#PubMed:32098170
Arabidopsis thalianaleafRNA-SeqEplusgene knock out 12
NGS2020_14_pi4kb1b2Study of pi4kb1b2 mutantArabidopsis thalianaleaf, rootsRNA-SeqDifferential gene expression in seedlings of pi4kb1b2gene knock out,organ comparison 12
NGS2020_19_ARIMNetBarley Stress ToleranceHordeum vulgareaerialRNA-SeqBarley responses to nitrate limitationdose response,genotype comparison 18
NGS2020_20_IDEASIDEAS project on nitrogen starvation
#PubMed:37954572
Arabidopsis thalianarosetteRNA-SeqIDEAStreated vs untreated comparison 20
NGS2020_24_ERAProtein farnesylation is involved in the adaptation of Arabidopsis to nitrogen starvationArabidopsis thalianarosetteRNA-SeqNitrogendose response,genotype and ecotype comparison 18
NGS2021_03_Snap33Description of Arabidopsis thaliana t-SNARE SNAP33
#PubMed:38281242
Arabidopsis thalianaseedling,whole plantRNA-SeqRNA-seq snap33-1 vs WT gene knock out,genotype comparison,time course 12
NGS2021_04_MACTranscriptome analysis of mutants in uncharacterised mitochondrial proteins
#PubMed:37651534
Arabidopsis thalianaseedlingRNA-SeqmTRANgene knock out 6
ProjectTitleOrganismOrgans/TissuesTechnologyExperiment NameExperiment TypeNb Samples
ProjectTitleOrganismOrgans/TissuesTechnologyExperiment NameExperiment TypeNb Samples
12PLEX_MED_2013_04Influence of Nod Factors on early developmental stages of root development in Medicago truncatula
#PubMed:28073951
Medicago truncatularootsArrays12PLEX_MED_2013_04treated vs untreated comparison 12
12plex_medicago-2012-0...12plex-medicago-2012-06_GENOPEA3.2
#PubMed:31440268
Medicago truncatulacaulin leaf, flower budArraysVegetative and reproductive leavestime course,treated vs untreated comparison 30
12plex_medicago_2014_0...analysis of symbiotic root nodule developmentMedicago sativanodule, rootsArraysNAR nodule vs root transcriptomeorgan comparison 8
12PLEX_PEA_2013_02Water stress and seed filling in pea Pisum sativumcaulin leafArrays12PLEX_PEA_2013_02_Ftreated vs untreated comparison 12
12PLEX_PEA_2013_02Water stress and seed filling in pea Pisum sativumseedArrays12PLEX_PEA_2013_02_G treated vs untreated comparison 12
12plex_poplar_2012-01Characterization of early molecular events of woody stem gravitropism independently of phototropic responsesPopulus tremula x Populus albastemArraysGravitropic stimulation / Isotropic lighttreated vs untreated comparison 16
12plex_vitis_2011-02Défistim Vitis viniferacaulin leafArrays12PLEX_VITIS_2011_02_24hnormal vs disease comparison,treated vs untreated comparison 21
12plex_vitis_2011-02Défistim Vitis viniferacaulin leafArrays12PLEX_VITIS_2011_02_48hnormal vs disease comparison 21
12PLEX_WHEAT_2012-05The wheat grain transcriptome response to high temperature
#PubMed:29940014
Triticum aestivumseedArrays12PLEX-WHEAT_2012-05genotype comparaison,treated vs untreated comparison 96
4plex_Brassica_2015_04Impact of atmospheric benzene on leaves of Brassica oleracea.Brassica oleraceaaerialArraysImpact of different doses of benzene on leaves of Brassica oleraceatreated vs untreated comparison 16
4plex_MAIZE_2015_02FUI GranoFlakes.
#PubMed:28450877
Zea maysseedArraysAlbumen Vitreux vs Albumen Farineuxtissue comparison 16
4plex_MAIZE_2015_02FUI GranoFlakes.Zea maysseedArraysCINETIQUE comparisontime course 16
4PLEX_PEA_2014_01Characterization of transcriptome changes in leaves of wild-type and mutant lines (for a sulfur transporter) subjected or not to sulfur deficiency during the reproductive phasePisum sativumcaulin leafArraysTranscriptome changes in pea leaves with sulfur deficency/sufficienty during reproductive phase.gene knock out,genotype comparaison,treated vs untreated comparison 32
4plex_Physco_2014-05Strigopath/Physcomitrella patensPhyscomitrella patenswhole plantArraysPpmax2 response to GR24genotype comparaison,normal vs transgenic comparaison,treated vs untreated comparison 6
4PLEX_TOMATO_2013_03Effect of drought stress on the transcriptome of tomato leaves.
#PubMed:26582510
Solanum lycopersicumcaulin leafArrays4PLEX_TOMATO_2013_03genotype comparaison 8
AAP_BAP_NitroPath_2014Nitrogen nutrition and pathogen susceptibility: priming by metabolism.
#PubMed:32939948
Arabidopsis thalianarosetteRNA-SeqBotrytisxNnormal vs disease comparison 32
ADT03-02_Leaf_Flower-B...Genes expressed in flowers and leaves
#PubMed:15269332
Arabidopsis thalianaflower, rosetteArraysLeaf_Flower-budorgan comparison 2
ADT04-03_FDH_Drought Analysis of FDH (Formate dehydrogenase) insertion mutants in response to drought stress. Arabidopsis thalianarosetteArraysDrought stressgene knock out,treated vs untreated comparison 14
ADT05-01_Hormon_cellsEffect of the Auxin/Cytokinin ratio on the transcriptome of stem cellsArabidopsis thalianacell culture/primary cellArraysCyt_Aux_Balancedose response 21
ADT05-04_DRNEmbryonic patterning in Arabidopsis thalianaArabidopsis thalianaprotoplastArraysDRN/DRN-L expressing cells vs non-epressing cellsgenotype comparaison 12
ADT05-04_DRNEmbryonic patterning in Arabidopsis thalianaArabidopsis thalianaseedArraysmutant vs wildtypegene knock out 4
ADT06-01_ESR1-DRN_dexa...Transcriptomic study of the transcription factor ESR1/DRN.
#PubMed:23011125
Arabidopsis thalianawhole plantArraysESR1-DRNnormal vs transgenic comparaison 12
ADT06-02_PollenComparison between Columbia and WS pollen RNAs.Arabidopsis thalianapollenArraysPollenecotype comparison 2
ADT06-03_MKK2-cold Transcriptomic analysis of mkk2 upon Cold stress
#PubMed:19529823
Arabidopsis thalianaaerialArraysMKK2_mkk2_and_WRKY19_cold_time_coursetime course,wt vs mutant comparison 28
ADT06-03_MKK2-coldTranscriptomic analysis of mkk2 upon Cold stressArabidopsis thalianawhole plantArraysMutantsgene knock out 14
ADT06-04_miRNA_Nitroge... To discover miRNA implied following a Nitrogen starvation and after re-supply.Arabidopsis thalianaroots, rosetteArraysmiRNA_Nitrogentime course 8
ADT07-01_miRNA-NmiRNA and Nitrogen starvation and resupplyArabidopsis thalianaroots, rosetteArraysNitrogen starvationtime course 16
ADT07-02_C-N_Cells C/N balance in cellsArabidopsis thalianacell culture/primary cellArraysCellsdose response 18
ADT07-03_miR398-mutant...Analysis of miR398 mutants.
#PubMed:20128885
Arabidopsis thalianarosetteArraysmiR398 mutant analysisgene knock out 8
ADT08-01_uppTrancriptome analysis of the Arabidopsis upp-1/2 mutantsArabidopsis thalianawhole plantArraysADT08-01_uppwt vs mutant comparison 16
ADT09-01_Thellungiellaosmotic stress tolerance in Thellungiella halophylaArabidopsis thaliana, Thellungiellapistil,stamen, rosetteArraysThelungiellagenotype comparaison 4
ADT09-02_firemanImpact of the fireman mutation in the Erwinia amylovora response of Arabidopsis Arabidopsis thalianaaerialArraysFireman vs WT Erwinia infectionnormal vs disease comparison,normal vs transgenic comparaison 8
ADT10-01_WIP2Transcriptome analysis of WIP overexpressing plantsArabidopsis thalianaseedlingArraysWIP overexpressing plantsgene knock in (transgenic),normal vs transgenic comparaison 9
ADT10-02_35sUPRTTranscriptomic analysis of overexpression URPT gene.
#PubMed:19563437
Arabidopsis thalianawhole plantArraysUPRT overexpression normal vs transgenic comparaison 10
ADT12-01_UPRTPlant RABT n°1Arabidopsis thalianawhole plantArraysPlant RABT n°1treated vs untreated comparison 8
AF01_Cul3_aMolecular and functional characterisation of Arabidopsis Cullin 3A
#PubMed:15659098
Arabidopsis thalianawhole plantArraysComparisonnormal vs disease comparison 6
AF01_Cul3a2_Cul3bStudy of the function of SCF complexes in Arabidopsis.Arabidopsis thalianaseedlingArrayscomparison Col0 vs 003Dwt vs mutant comparison 6
AF01_Cul3a2_Cul3bStudy of the function of SCF complexes in Arabidopsis.Arabidopsis thalianaseedlingArrayscomparison WS vs CRB (Cul3a)wt vs mutant comparison 6
AF09_HCAMolecular characterization of a mutant altered in the vascular system organization (hca: high cambial activity).
#PubMed:16212606
Arabidopsis thalianaseedlingArrayscomparison mutant HCA vs WSwt vs mutant comparison 6
AF09_lignin Lignin mutants and UV stress
#PubMed:19149885
Arabidopsis thalianastemArraysCCRnormal vs disease comparison 4
AF09_ligninLignin mutants and UV stress Arabidopsis thalianastemArraysstem developementtime course 3
AF09_ligninLignin mutants and UV stress Arabidopsis thalianastemArraysBXnormal vs disease comparison 4
AF09_ligninLignin mutants and UV stress Arabidopsis thalianawhole plantArraysEBL87normal vs disease comparison,treated vs untreated comparison 4
AF09_ligninLignin mutants and UV stress Arabidopsis thalianawhole plantArraysDML6normal vs disease comparison,treated vs untreated comparison 8
AF09_ligninLignin mutants and UV stress Arabidopsis thalianastemArraysCDnormal vs disease comparison 6
AF13_PLP2 Functionnal analysis of lipid acyl hydrolases in Arabidopsis antimicrobial defenseArabidopsis thalianarosetteArraysPLP2 Botrytis cinerea 2gene knock in (transgenic),normal vs rnai mutant comparaison,time course 5
AF13_PLP2Functionnal analysis of lipid acyl hydrolases in Arabidopsis antimicrobial defenseArabidopsis thalianarosetteArraysPLP2 Paraquatgene knock in (transgenic),time course 7
AF13_PLP2Functionnal analysis of lipid acyl hydrolases in Arabidopsis antimicrobial defenseArabidopsis thalianarosetteArraysPLP2 Bc 1normal vs rnai mutant comparaison,time course,treated vs untreated comparison 9
AF24_CytP450_Cyp98A3comparison mutant cytP450 vs control WS
#PubMed:16377748
Arabidopsis thalianawhole plantArrayspolyphenolwt vs mutant comparison 2
AF30_Starch_circadian_...The impact of some genes mutations implicated in the amidon metabolismArabidopsis thalianarosetteArraysDouble mutant SBEgene knock out 12
AF30_Starch_circadian_...The impact of some genes mutations implicated in the amidon metabolismArabidopsis thalianarosetteArraysCircadian cycletime course 10
AF31_HAF2_GCN5histone acetylation required for gene expression during germinationArabidopsis thalianaseedlingArraysComparison WS vs HAF2_GCN5wt vs mutant comparison 9
AF31_mgoun3Leaves transcriptome analysis of mgo3 mutant in Arabidopsis thaliana
#PubMed:16728410
Arabidopsis thalianaseedlingArraysComparison WS vs DRNwt vs mutant comparison 6
AF31_TAFhaf2Gene expression affected by the mutation of Arabidopsis thaliana HAF2 gene encoding TATA-binding protein (TBP)-associated factor TAF1
#PubMed:15525647
Arabidopsis thalianarosetteArrayscomparison TAF WSwt vs mutant comparison 6
AF32_Root-Knot_Nematod... Response to nematode infection
#PubMed:16236154
Arabidopsis thalianarootsArraysNematode-1normal vs disease comparison 12
AF47_ThioredoxinsImpact of a plastidial redox perturbation on Arabidopsis transcriptomeArabidopsis thalianarosetteArraysComparison Ws vs DE and DYwt vs mutant comparison 6
AF51_ATM A functional study of genes that might play a role in DNA repair/recombination and in the response to oxidative stress (Microarrays expression studies, Microbiological assays, In planta functional studies)
#PubMed:17487278
Arabidopsis thalianaseedlingArraysSADE-CATMAtreated vs untreated comparison 4
AF51_ATMA functional study of genes that might play a role in DNA repair/recombination and in the response to oxidative stress (Microarrays expression studies, Microbiological assays, In planta functional studies)Arabidopsis thalianarootsArraysATM-ROOTtreated vs untreated comparison 8
AF51_ATMA functional study of genes that might play a role in DNA repair/recombination and in the response to oxidative stress (Microarrays expression studies, Microbiological assays, In planta functional studies)Arabidopsis thalianawhole plantArraysATM time coursetime course 16
AF73_OST2 Open stomata 2 mutantArabidopsis thalianaaerialArraysOPEN STOMATA2wt vs mutant comparison 12
AFFY_Aba_Ath1Characterization of aba3-1 suppressor mutantsArabidopsis thalianaaerialArraysAFFY_Aba_Ath1wt vs mutant comparison 12
AFFY_AGRO-BI_MedicagoAGRO-BI-ToulouseMedicago truncatularootsArraysAFFY-AGRO-BI-Medicagogrowth in nitrogen-sufficient (s) vs. nitrogen-limited (l) conditions 18
AFFY_AMs_MAIZECell wall maize mutant during arbuscular mycorrhizal symbiosisZea maysrootsArraysAFFY_AMs_MAIZEtreated vs untreated comparison 8
AFFY_Aphanomyces_Medic...Comparison of plant responses upon Aphanomyces euteiches infection in wild type (A17) line and in the nfp-2 mutant
#PubMed:27994614, 23432463
Medicago truncatularootsArraysAFFY_Aphanomyces_Medicagonear isogenic lines (hif),normal vs ems mutant comparison 12
AFFY_ATH_2012_04Fonctional caracherization of JMJ24, a putative histone demethylaseArabidopsis thalianaaerialArraysAFFY_ATH_2012_04gene knock out 8
AFFY_ATH_2012_05Arabidopsis Ubiquitin-Like Proteases characterization
#PubMed:27325215
Arabidopsis thalianaseedlingArraysAFFY_ATH_2012_05gene knock out 12
AFFY_BRACHY_2011_11Transcriptomics analysis of DON and Fusarium graminearum response in Brachypodium distachyon
#PubMed:25063396
Brachypodium distachyonsilique and seedArraysAFFY_BRACHY_2011_11normal vs disease comparison,time course 9
AFFY_Bt2_maizePhenotypic and molecular characterisation of a novel Bt2 allele in maize
#PubMed:18287491
Zea maysseedArraysAFFY_Bt2_maizegene knock out 4
AFFY_CCR_MaizeDownregulation of cinnamoyl-coenzyme A reductase in maize
#PubMed:21493812
Zea maysaerialArraysAFFY_CCR_Maizegene knock in (transgenic) 4
AFFY_Cellwall_MaizeUnderstanding the Diversity of Maize Cell WallZea maysstemArraysAFFY_Cellwall_Maizeorgan comparison 10
AFFY_cinetique_Lyon_Ro...Flower/Petal initiation and development in roses
#PubMed:22194838
Rosa chinensisflowerArraysAFFY_cinetique_Lyon_Rosetime course 12
AFFY_COTTON_2011_12Comparative transcriptional profiling of cotton fibers in Gossypium hirsutum and Gossypium barbadense using EST pyrosequencing and microarray hybridization
#PubMed:23166598
Gossypium hirsutumseedArraysAFFY_COTTON_2011_12x comparison between two genotypes in cell type 4
AFFY_Diversity_MaizeUnderstanding the Diversity of Maize Cell WallZea maysstemArraysAFFY_Diversity_Maizeorgan comparison 4
AFFY_duplicature_Lyon_...Double flower phenomenon: Control of petal number in roses
#PubMed:22194838
Rosa hybrida , Rosa gallicaflowerArraysAFFY_duplicature_Lyon_Rosegenotype comparaison 8
AFFY_EN-TJ_MaizeUnderstanding the Diversity of Maize Cell WallZea maysaerialArraysAFFY_TJ_Maizegenotype comparaison 4
AFFY_EN-TJ_MaizeUnderstanding the Diversity of Maize Cell WallZea maysaerialArraysAFFY_EN_Maizegenotype comparaison 4
AFFY_floralAngers_RoseStudy of floral initiation and recurrent blooming in rose
#PubMed:22194838
Rosa hybrida , Rosa lucieaeshoot apexArraysAFFY_floral_Rosetime course 26
AFFY_H2O2_MedicagoIdentification of putative H2O2 regulated genes during the establishment of the Sinorhizobium meliloti – Medicago truncatula symbiotic interaction.
#PubMed:23347006
Medicago truncatularootsArraysAFFY_H2O2_Medicagotreated vs untreated comparison 8
AFFY_herbicide_vulpinMetabolism-based resistance to herbicides in black-grassAlopecurus myosuroidestillerArraysAFFY_herbicide_vulpintreated vs untreated comparison 6
AFFY_hypocTemp_Medicag...Identification of molecular factors explaining decreased hypocotyl growth at low temperature in Medicago truncatula.Medicago truncatulahypocotylArraysAFFY_hypocTemp_Medicagotime course 24
AFFY_L2BCTV_AthExpression viral protein L2 BCTV in Arabidopsis thaliana
#PubMed:22404507
Arabidopsis thalianaaerialArraysAFFY_L2BCTV_Athgene knock in (transgenic) 9
AFFY_MED_2010_12Comparison of plant responses upon Aphanomyces euteiches infection in wild type (A17) line and in the Mtnf-ya1-1 mutantMedicago truncatularootsArraysAFFY_infection_Medicagonormal vs disease comparison,normal vs ems mutant comparison,time course 12
AFFY_MED_2011_04Molecular mechanisms of partial resistance to Aphanomyces euteiches in Medicago truncatula.
#PubMed:25765337
Medicago truncatularootsArraysAFFY_MolecularMechanism_Medicagoresistance vs susceptibility comparison,time course,treated vs untreated comparison 18
AFFY_MED_2011_06Analysis of the Medicago noot mutant Medicago truncatularootsArraysAFFY_MED_2011_06gene knock out,organ comparison 10
AFFY_MED_2011_09Analysis of Medicago truncatula root transcriptome in response to mycorrhization by Glomus intraradices under phosphate and nitrogen limitation
#PubMed:23506613
Medicago truncatularootsArraysAFFY_MED_2011_09wt vs mutant comparison 12
AFFY_MED_2011_10Comparison of plant responses upon Aphanomyces euteiches infection in wild type (A17) line and in the lyr3-1 and lyr3-2 mutantsMedicago truncatularootsArraysAFFY_MED_2011_10near isogenic lines (hif),normal vs mutant comparison 18
AFFY_MED_2011_14Transcriptomic analysis of roots of WT (A17) Medicago truncatula plants and of a hypermycorrhizal mutant (B9) grown on limiting (P/10) or non-limiting phosphate (P2).
#PubMed:24815324
Medicago truncatularootsArraysAFFY_MED_2011_14dose response,gene knock out 12
AFFY_MED_2012_03Characterization of new phytostimulatrices molecules for the improvement of plants products and crop resistance to diseasesMedicago truncatularootsArraysAFFY_MED_2012_03normal vs ems mutant comparison 27
AFFY_MED_2013_05Comparison between nodules of WT, NF737 and MS240 linesMedicago truncatularootsArraysAFFY_MED_2013_05gene knock out 9
AFFY_MeJA_ArabidopsisStudy of the effect of C2 on the transcriptome and the response to MeJAArabidopsis thalianawhole plantArraysAFFY_MeJA_Arabidopsisgene knock in (transgenic),treated vs untreated comparison 12
AFFY_meloidogyne_riceOryza sativa genes expressed in the early compatible interaction with root-knot nematodes Meloidogyne graminicola.Oryza sativarootsArraysAFFY_meloidogyne_ricenormal vs disease comparison,time course 9
AFFY_Meloidogyne_rice2Oryza sativa genes expressed in the early compatible interaction with root-knot nematodes Meloidogyne incognitaOryza sativarootsArraysAFFY_meloidogyne_rice2normal vs disease comparison 6
AFFY_mildey_vitisGene expression patterns associated to the grapevine resistance to downy mildew derived from Muscadinia rotundifoliaVitis viniferarosetteArraysAFFY_mildey_vitisnormal vs disease comparison 12
AFFY_Nitrogen_MedicagoRegulation of nitrogen acquisition (NO3-, NH4+ et N2) by the nitrogen status of the whole plant Medicago truncatula
#PubMed:18287487
Medicago truncatulaaerial, rootsArraysAFFY_Nitrogen_Medicagotreatment variations 26
AFFY_ORLEANS_CIRCADrythme circadien dans l’expression des gènes impliqués dans la formation du bois de peuplierPopulus tremula x Populus albastemArrayscircad_pop1time course 20
AFFY_pathogen_MedicagoIdentification of key genes involved in the establishment of symbiotic and pathogenic plant-microorganism interactions
#PubMed:22360638
Medicago truncatularootsArraysAFFY_pathogen_Medicagoorgan comparison 12
AFFY_pathogen_riceIdentification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
#PubMed:17905473
Oryza sativarosetteArraysAFFY_pathogen_ricenormal vs disease comparison,time course,treated vs untreated comparison 8
AFFY_PetalDvt_Lyon_Ros...Flower/Petal initiation and development in roses
#PubMed:22194838
Rosa hybrida petalArrays AFFY_PetalDvt_Lyon_Rosescented vs non scented flowers 4
AFFY_Phloem_ATh1transcriptome octopusArabidopsis thalianawhole plantArraysAFFY_Phloem_ATh1gene knock in (transgenic),gene knock out 6
AFFY_POP_2011_08TRANSCRIPTOMIC ANALYSIS OF POPLAR STEM ACCOMMODATION TO REPEATED BENDING
#PubMed:24684233
Populus tremula x Populus albastemArraysPOPLAR BENT STUDYgene knock in (transgenic) 53
AFFY_POP_2011_08TRANSCRIPTOMIC ANALYSIS OF POPLAR STEM ACCOMMODATION TO REPEATED BENDINGPopulus tremula x Populus albastemArraysPOPLAR ESTRADIOL STUDYtime course 18
AFFY_POPSEC_Nancy_Leav...Molecular bases of acclimatation and adaptation to water deficit in poplar
#PubMed:21073700
Populus deltoides x Populus nigrarosetteArraysAFFY_POPSEC_Nancy_Leaves2007_poplar treated vs untreated comparison 45
AFFY_POPSEC_Nancy_Leav...Molecular bases of acclimatation and adaptation to water deficit in poplarPopulus deltoides x Populus nigrarosetteArraysAFFY_POPSEC_Nancy_Leaves2008_poplar treated vs untreated comparison 24
AFFY_POPSEC_Nancy_POPH...Molecular bases of acclimation and adaptation to water deficit in poplarPopulus deltoides x Populus nigrarootsArraysAFFY_POPSEC_Nancy_POPHYDRO_Roots_poplar treated vs untreated comparison 4
AFFY_POPSEC_Nancy_Root...Molecular bases of acclimation and adaptation to water deficit in poplarPopulus deltoides x Populus nigrarootsArraysAFFY_POPSEC_Nancy_Roots_poplar treated vs untreated comparison 45
AFFY_POPSEC_Nancy_Stom...Molecular bases of acclimation and adaptation to water deficit in poplarPopulus deltoides x Populus nigrarosetteArraysAFFY_POPSEC_Nancy_Stomata_poplar treated vs untreated comparison 45
AFFY_Ralstonia_Medicag...Transcriptome analysis of the interaction Medicago truncatula - Ralstonia solanacearum
#PubMed:24325235
Medicago truncatularootsArraysAFFY_Ralstonia_Medicagonormal vs disease comparison,time course 27
AFFY_Ralstonia_Peeters...Ralstonia solanacearum effector-specific effect on Medicago truncatula trancriptome.Medicago truncatularootsArraysAFFY_Ralstonia_Peeters_Medicagogene knock out,normal vs disease comparison,time course,treated vs untreated comparison 24
AFFY_rewatering_poplarGlobal gene expression in young differentiating xylem of poplar in response to a drought –rewatering cyclePopulus tremula x Populus albastemArraysrewateringtreated vs untreated comparison 6
AFFY_Rice_2011_03Transcriptomic study of the rice seed compartimentation during germination
#PubMed:29213276, 25008975
Oryza sativaembryonic axis, endospermArraysAFFY_Compartimentation_Rice_Albumen_Embryonorgan comparison,time course 37
AFFY_RICE_2011_07: Transcriptomic analysis of rice leaves challenged with virulent and avirulent Xoo strains Oryza sativacaulin leafArraysAFFY_RIZ_2011_07avirulent vs virulent 18
AFFY_RICE_2012_01Transcriptomic study of rice seed ageingOryza sativaembryonic axisArraysOVATIONtreated vs untreated comparison 6
AFFY_RICE_2012_01Transcriptomic study of rice seed ageingOryza sativaembryonic axisArraysIVTtreated vs untreated comparison 12
AFFY_RNAI_CADpoplarTranscriptome analysis of RNAi-CAD transgenic poplarsPopulus tremula x Populus albaxylemArraysAFFY_RNAI_CADpoplarsnormal vs rnai mutant comparaison 13
AFFY_ROSE_2012_06Rose perfume studies
#PubMed:26138978
Rosa chinensispetalArraysAFFY_ROSE_2012_06normal vs rnai mutant comparaison 8
AFFY_seed_kinetic_Whea...Transcriptomic wheat seed
#PubMed:20697765, 22136458
Triticum aestivumseedArraysAFFY_seed_kinetic_Wheattime course 10
AFFY_Strigolactone_Sun...Identification of Strigolactone -regulated genes in sunflowerHelianthus annuusrootsArraysAFFY_Strigolactone_Sunflowertreated vs untreated comparison 24
AFFY_SUNFLOWER_2010_13ROS and hormones in sunflower seed dormancy.Helianthus annuusembryonic axisArraysAFFY_SUNFLOWER_2010_13treated vs untreated comparison 12
AFFY_SUNFLOWER_2011_02Effect of frost on sunflowerHelianthus annuusaerialArraysAFFY_SUNFLOWER_2011_02treated vs untreated comparison 12
AFFY_Sunyfuel_drought_...Sunyfuel
#PubMed:23056196
Helianthus annuuscaulin leafArraysAFFY_Sunyfuel_drought_Sunflowertreated vs untreated comparison 96
AFFY_syringae_Malaga_A...Role of different proteases in plant defenceArabidopsis thalianacaulin leafArraysAFFY_syringae_Malaga_Athalianagene knock out,normal vs antisens mutant comparison 24
AFFY_TOUR_2010_21Assessing drought stress transcriptomics in Helianthus annus in field culturesHelianthus annuuscaulin leafArraysAFFY_TOUR_2010_21treated vs untreated comparison 24
AFFY_TOUR_2012-02Study of sunflower seed dormancy by translatome analysis
#PubMed:30127315, 25157915
Helianthus annuusseedArraysAFFY_TOUR_2012-02time course,treated vs untreated comparison 18
AFFY_Xoo_RiceTranscriptomics-based identification of Xoo strain BAI3 Talc targets in rice
#PubMed:21679014
Oryza sativaaerialArraysAFFY_Xoo_Ricewt vs virulence mutant 9
AFFY_ZeaWall_RIL_MaizeExpression studies in 5 early maize RIL with contracted allelic patterns at major QTL positions.Zea maysear internodeArraysAFFY_ZeaWall_RIL_Maizegenotype comparaison,time course 20
AU05-01_P25P25 Transgenic Arabidopsis. Characterization of genes differentially expressed in roots of transgenic arabidopsis lines expressing the p25 protein of beet necrotic yellow vein virus.
#PubMed:20602166
Arabidopsis thalianarootsArraysStages 1.02-1.04 and 1.06normal vs transgenic comparaison 8
AU05-02_FWAEffect of DNA hypomethylation on gene expressionArabidopsis thalianarosetteArraysFWA-leavesgene knock out 7
AU05-02_FWAEffect of DNA hypomethylation on gene expressionArabidopsis thalianapollenArraysFWA-Pollengene knock out 6
AU05-03_GABATranscriptomic analysis of pop2-1 mutant in Arabidopsis thaliana : a step towards elucidation of the role of GABA in plants.
#PubMed:21471118, 23148892
Arabidopsis thalianawhole plantArraysLer vs pop2-1: GABA over-accumulation effectsgene knock out,time course 16
AU05-05_Rhodococcus Molecular analysis of symptom development on Arabidopsis Thaliana by the pathogenic bacterium Rhodococcus fascians.
#PubMed:19118125
Arabidopsis thalianastemArraysRhodococcus responsenormal vs disease comparison,time course 12
AU06-01_ITEGEImpact of Transposable Elements on Gene Regulation Arabidopsis thalianaaerial, flower, seedlingArrays Impact of the gcn2 mutationgene knock out 6
AU06-01_ITEGEImpact of Transposable Elements on Gene Regulation Arabidopsis thalianaaerial, flower, rosette, seedlingArraysEcotypes comparison (Col0 and Ler0)ecotype comparison 8
AU06-01_ITEGEImpact of Transposable Elements on Gene Regulation Arabidopsis thalianaaerial, flower, seedlingArrays Impact of SINE RNA gene knock in (transgenic) 6
AU06-02_Bzo2hFunctional Characterization of AtbZIP9Arabidopsis thalianawhole plantArraysZIP9_target_genesgene knock in (transgenic),gene knock out 9
AU06-03_TSN_FJTudor-SN knockout
#PubMed:20484005
Arabidopsis thalianarootsArraysTSN_FJgene knock in (transgenic),gene knock out 12
AU07-01_PLD-SARole of phospholipase D in salycilc acid signaling in Arabidopsis thaliana suspension cells.
#PubMed:19304931
Arabidopsis thalianacell culture/primary cellArraysidentification of SA responsive genes dependent on PLD activationtreated vs untreated comparison 12
AU07-02_TRV Functional Genomic study in virus-infected plants.
#PubMed:25358898
Arabidopsis thalianarosetteArraysArabidopsis transcriptome microarray from virus infected leafs.normal vs disease comparison 6
AU07-02_TRVFunctional Genomic study in virus-infected plants.Arabidopsis thalianaaerialArraysArabidopsis transcriptome microarray from virus infected plants.normal vs disease comparison 6
AU07-02_TRVFunctional Genomic study in virus-infected plants.Arabidopsis thalianarootsArraysArabidopsis transcriptome microarray from virus infected roots.normal vs disease comparison 6
AU07-03_MYB77Functional characterization of AtMYB77 transcription factor.Arabidopsis thalianaseedlingArraysWT/MYB77gene knock in (transgenic),gene knock out 6
AU07-04_VIP1Identification of the VIP1 targetsArabidopsis thalianawhole plantArraysper8::VIP micro-arraytreated vs untreated comparison 12
AU07-05_GroundwormsEffect of earthworms on Arabidopsis transcriptome.
#PubMed:23226498
Arabidopsis thalianaaerial, rootsArraysGroundwormstreated vs untreated comparison 8
AU07-06_GDHTranscriptomique analysis of GDHArabidopsis thalianaroots, rosette, stemArraysTrancript profiling in Arabidopsis GDH mutant.wt vs mutant comparison 21
AU07-07_Salmonella Interactions between plants and human pathogenic bacteria.
#PubMed:21915285
Arabidopsis thalianawhole plantArraysInfection with Salmonella or Pseudomonas or E. coli.treated vs untreated comparison 8
AU07-08_SQE Plant Small RNAs.Arabidopsis thalianawhole plantArraysNaCltreated vs untreated comparison 6
AU07-09_Alternaria Changes in gene expression in MKK2 and MKKKC5 mutantsArabidopsis thalianarosetteArraysAlternariatreatment variations 18
AU07-09_AlternariaChanges in gene expression in MKK2 and MKKKC5 mutantsArabidopsis thalianarosetteArraysMKK2EE and mkkkc5 mutantswt vs mutant comparison 6
AU07-10_mpkTranscriptomic analysis of MAPK KOs mutants under normal growing conditions.Arabidopsis thalianaseedlingArraysmpkgene knock out 14
AU07-10_mpkTranscriptomic analysis of MAPK KOs mutants under normal growing conditions.Arabidopsis thalianaseedlingArraysBBgene knock out 2
AU07-11_haikuStudy of small seed mutants.Arabidopsis thalianaseedArraysCompare haiku mutants with wildtypegene knock out 14
AU07-12_GeminiSelSupBiodiversity and functional genomics of endogenous small RNAs induced upon biotic and abiotic stresses in plants.
#PubMed:21441437
Arabidopsis thalianawhole plantArraysGEMSUPgene knock in (transgenic) 12
AU07-13_SQE1Functional analysis and biotechnological application of genes involved in drought and salt stress tolerance in plants.Arabidopsis thalianarosetteArraysSQE1gene knock out 6
AU08-01_Cytb561Ascorbate metabolism in plants: physiological function and biochemical properties of cytochromes b561Arabidopsis thalianarosetteArrayscytb1-1gene knock out 8
AU08-02_mkk1-mkk2Transcriptome of mkk1-mkk2 mutants.Arabidopsis thalianaseedlingArraysmkk1-mkk2gene knock out 6
AU08-04_DFOAnalysis of Arabidopsis transcriptome in response to deferoxamine.
#PubMed:24501001
Arabidopsis thalianaroots, rosetteArraysAnalysis of deferoxamine treated leaves and rootstime course,treated vs untreated comparison 16
AU08-05_p25IndGlobal transcriptome deregulation of P25 expressing Arabidospis thaliana.
#PubMed:20602166
Arabidopsis thalianarootsArraysComparison between constitutive and inducible p25 plantsgene knock in (transgenic) 20
AU08-06_mpk6_heat_stre... Transcriptomic analysis of mpk6 KO mutant after heat stress treatment
#PubMed:22236066
Arabidopsis thalianaseedlingArraysAU08-06_mpk6_heat_stressedtreated vs untreated comparison 8
AU-09-01_mpk_flagellin...Flagellin response in mpk mutants.Arabidopsis thalianaseedlingArraysmpk6gene knock out 4
AU-09-01_mpk_flagellin...Flagellin response in mpk mutants.Arabidopsis thalianaseedlingArraysmpk3 flg22treated vs untreated comparison 4
AU-09-01_mpk_flagellin...Flagellin response in mpk mutants.Arabidopsis thalianaseedlingArraysBak1 bkk1 flg22treated vs untreated comparison 4
AU-09-01_mpk_flagellin...Flagellin response in mpk mutants.Arabidopsis thalianaseedlingArraysmpk3wt vs mutant comparison 4
AU-09-01_mpk_flagellin...Flagellin response in mpk mutants.Arabidopsis thalianaseedlingArraysCol-0 flg22treated vs untreated comparison 4
AU-09-01_mpk_flagellin...Flagellin response in mpk mutants.Arabidopsis thalianaseedlingArraysBak1Bkk1gene knock out 4
AU-09-01_mpk_flagellin...Flagellin response in mpk mutants.Arabidopsis thalianaseedlingArraysmpk4 flg22treated vs untreated comparison 4
AU-09-01_mpk_flagellin...Flagellin response in mpk mutants.Arabidopsis thalianaseedlingArraysmpk6 flg22treated vs untreated comparison 4
AU09-02_WOX14Gene expression affected by the AtWOX14 gene mutation.Arabidopsis thalianaseedlingArraysWOX13 orthologous groupgene knock out 8
AU09-03_gamma-irradiat... Transcriptomic analysis of effetcs of ionising radiation on Arabidopsis thaliana.
#PubMed:22921004
Arabidopsis thalianawhole plantArrays2 doses of ionising radiations (X-rays) dose response,time course 12
AU09-04_GeminiSilSup2PLASMAR. Biodiversity and functional genomics of endogenous small RNAs induced upon biotic and abiotic stresses in plants.Arabidopsis thalianawhole plantArraysGEMSUPV2gene knock in (transgenic) 6
AU10-01_overexpression...Transcriptomic analysis of the overexpression of Oxi1Arabidopsis thalianarosetteArraysAU10-01_overexpressionoxi1normal vs transgenic comparaison 4
AU10-03_hub1Kinetics of gene expression after light exposure in hub1-3 mutant compared to wild-type
#PubMed:22829781
Arabidopsis thalianaseedlingArraysKinetics of gene expression after light exposure in hub1-3 mutant compared to wild-typegenotype comparaison,time course 12
AU10-04_phytoremediati...phytoremediation
#PubMed:27769163
Arabidopsis thalianawhole plantArraysImpact of sucrose on the tolerance of phenanthrenetreated vs untreated comparison 33
AU10-06_SalmonellaTrancriptomic analysis in Salmonella typhimurium infectionArabidopsis thalianaseedlingArraysSalmonell invAnormal vs antisens mutant comparison 4
AU10-06_SalmonellaTrancriptomic analysis in Salmonella typhimurium infectionArabidopsis thalianaseedlingArraysSalmonella_14028Snormal vs disease comparison 4
AU10-06_SalmonellaTrancriptomic analysis in Salmonella typhimurium infectionArabidopsis thalianaseedlingArraysSalmonella_prgHnormal vs disease comparison 4
AU10-06_SalmonellaTrancriptomic analysis in Salmonella typhimurium infectionArabidopsis thalianaseedlingArraysinvA_vs_14028Snormal vs disease comparison 4
AU10-07_MPK4gofTranscriptome study of mpk4 complemented line with a hyperactive form of MPK4 (MPK4 GOF).Arabidopsis thalianawhole plantArraysmpk4/MPK4 GOF vs mpk4/MPK4 vs Col0genotype comparaison 8
AU10-09_GemSupV2TS-7Biodiversity and functional genomics of endogenous small RNAs induced upon biotic and abiotic stresses in plants.Arabidopsis thalianawhole plantArraysGEMSUPV2TS-7gene knock in (transgenic) 6
AU10-10_ColdPI4kinases and Long-chain bases kinases in response to cold stress
#PubMed:24758581
Arabidopsis thalianawhole plantArraysdefenses mechanism in response to cold stresstreated vs untreated comparison 16
AU10-11_DspAGene expression in response to the expression of the bacterial type 3 effector DspA/E
#PubMed:23634775
Arabidopsis thalianaseedlingArraysInduction of DspA/E expression in a transgenic A. thaliana linegene knock out,genotype comparaison,treated vs untreated comparison 8
AU10-12_PAPhosphatidic acid in gene expression
#PubMed:23964284
Arabidopsis thalianacell culture/primary cellArraysPhosphatidic acid in gene expressiontreated vs untreated comparison 30
AU10-13_CellWallDifferentially expressed genes in stems of Arabidopsis deficient in monolignol export and in stems of Arabidopsis plants expressing a hydroxycinnamoyl-CoA hydratase/lyase
#PubMed:22458713
Arabidopsis thalianastemArrayscell wall mutants gene knock in (transgenic),normal vs transgenic comparaison 9
AU10-14_FerRole of ethylene in Fe deficieny response signalling
#PubMed:21586684, 22212120
Arabidopsis thalianawhole plantArraysResponse of ein3eil1 mutants to Fe deficiencygene knock out,treated vs untreated comparison 12
AU10-15_cinerootstransdifferenciation from root to shoot apical meristem Arabidopsis thalianarootsArraystransdifferenciationtime course 8
AU11-01_WOX14bisFloral stem gene expression affected by the AtWOX14 gene mutationArabidopsis thalianastemArraysTranscriptome analyses of N8514 and wox14gene knock out,normal vs transgenic comparaison 4
AU11-02_CHO-THFTranscriptomic and metabolic changes in Arabidopsis thaliana supplemented with 5-CHO-THF and its relationship with the accumulation and transformation to THF active derivativesArabidopsis thalianacaulin leaf, rootsArraysshoots and roots treated with Methotrexate and 5-Formyl-THFtreated vs untreated comparison 18
AU11-03_GraviteAction of microgravity on root developmentArabidopsis thalianarootsArraysAction of microgravity on root developmenttreated vs untreated comparison 12
AU11_04_BenzeneStudy of benzene metabolism in higher plantsBrassica napuscaulin leafArraysBenzene effects on Brassica leavestreated vs untreated comparison 2
AU12-01_DetoxStudy of benzene metabolism in higher plants.Brassica oleraceacaulin leafArraysBenzene effects on leavestreated vs untreated comparison 8
AU12-06_CPSF30Cell death control by CPSF30.
#PubMed:24706550
Arabidopsis thalianarosetteArrayscpsf30 mips1 transcriptomegenotype comparaison 8
AU13-01_PI-PLCInhibition of the PI-PLC by U73122Arabidopsis thalianacell culture/primary cellArraysInhibition des PI-PLC par le U73122treated vs untreated comparison,treatment variations 6
AU13-03_CUC2Morphodynamics in Plants: from gene to shape.Arabidopsis thalianaflower budArraysIdentification of target genes regulated by CUC2 in A.thaliana shoot apical meristem.genotype comparaison 6
AU13-04_crlTranscriptome comparison of the crl mutant and CDT1-RNAi line
#PubMed:25037213
Arabidopsis thalianaseedlingArraysCDT1_bisnormal vs rnai mutant comparaison,normal vs transgenic comparaison 8
AU13-06_FITDifferential gene expression in A. thaliana roots depending on iron supply and FIT (FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR) abundanceArabidopsis thalianarootsArraysFe-FIT-Diffnormal vs transgenic comparaison,treated vs untreated comparison 18
AU13-07_OxbHLH039 overexpression results in iron accumulation dependent on the FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (FIT)
#PubMed:28883478
Arabidopsis thalianaseedling, whole plantArraysComparison 39Ox and WT samples with or without Fenormal vs transgenic comparaison,treated vs untreated comparison 12
AU13-08_AtpPLAII-alphaNoneArabidopsis thalianarosetteArraysTranscriptional profilling of Arabidopsis plants.genotype comparaison,treated vs untreated comparison 12
AU13-11_GravityGravitational signature of synchronized cell cultures in particular cell cycle stagesArabidopsis thalianacell culture/primary cellArraysGravitytime course,treated vs untreated comparison 12
AU13-12_Polysometranscriptomic and translatomic analysis of Arabidopsis seeds
#PubMed:26019300
Arabidopsis thalianaseedArraysTranscriptome and translatome of Arabidopsis WT seeds according to dormancytime course 24
AU13-14_MYB1MYB1’s partnersArabidopsis thalianastemArraystranscript modification by MYB1 interactantsnormal vs transgenic comparaison 12
AU13-15_sup62Transcriptome sup62 and cpsf30 mpk4Arabidopsis thalianaaerial,rosetteArrays4 mutantsgene knock out,genotype comparaison 10
AU14-01_TnProjet TN 2014 : effet sur Arabidopsis thaliana.Arabidopsis thalianacaulin leafArraysObservation des effets du produit Tn sur l’expression des gènes d’A.thaliana.dose response 10
AU14-03_BIGUNFunctional characterization of BIGUN proteins in Arabidopsis thaliana.Arabidopsis thalianarosetteArraysbigun transcriptomicsgene knock out,normal vs disease comparison 18
AU14-04_INASEEDINASEEDarray
#PubMed:30998684
Arabidopsis thalianaseed,seedlingArraysINASEEDarraygene knock out 18
AU14-05_pi4kbeta1beta2pi4kbeta1beta2 sid2 triple mutantArabidopsis thalianarosetteArrayspi4kbeta1beta2 sid2 triple mutantgenotype comparaison 8
AU14-08_xrn_vcsSeed transcriptome of xrn4-5 and vcs-8 mutants.
#PubMed:28126845
Arabidopsis thalianaseedArraysSeed transcriptome of xrn4-5 and vcs-8 mutants.gene knock out 9
AU14-09_SiliceImpact on Arabidopsis thaliana transcriptome of multifunctional silica nanoparticles based on metal atom clusters.Arabidopsis thalianacell culture/primary cellArraysCLUSTOP transcriptomics.treated vs untreated comparison 10
AU14-10_WD40Effet of light on translatome of Arabidopsis seeds during germinationArabidopsis thalianaseedArraysEffet of light on translatome of Arabidopsis seeds during germinationtreated vs untreated comparison 12
AU14-11_LevureStudy the genes expression by a residue of cultureArabidopsis thalianacell culture/primary cellArraysStudy of a kinetic answertime course,treated vs untreated comparison 8
AU15-01_IRON-FITDifferential gene expression in A. thaliana roots depending on iron supply and FIT (FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR) abundance.
#PubMed:27716045
Arabidopsis thalianaseedlingArraysFe-FIT-Diff_6dgene knock in (transgenic),gene knock out,treated vs untreated comparison 18
AU15-02_TRXRedox regulation in plants.Arabidopsis thalianaaerialArraysEffect of FTR mutation on Arabidopsis trancriptomegene knock out 12
AU15-04_XenoMolecular analysis of signal transduction mechanisms involved in plant – organic pollutant interactions.
#PubMed:30080643
Arabidopsis thalianarosetteArraysTranscriptomic analysis of the effects of low levels of atrazine and by-productstreated vs untreated comparison 8
AU15-05_FITDifferential gene expression in A. thaliana seedlings depending on the introduction of a point mutation in FIT (FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR) under iron deficient conditions.Arabidopsis thalianaseedlingArraysDifferential gene expression in A.Tha. depending on mutation in FITgene knock out,genotype comparaison,normal vs transgenic comparaison 12
AU17-01_Dgk5.1_bisTranscriptome analysis of dgk5 mutant (with 3 biological replicats).Arabidopsis thalianaseedlingArraysTranscriptome analysis of dgk5 mutant in response to flagellintreated vs untreated comparison 12
BLAN08_RNApathsIntegrating RNA Quality Control and RNA Silencing PathwaysArabidopsis thalianaaerialArraysAnalyses of endogenous RNA substrates of XRN and exosome and PTGS pathways.gene knock in (transgenic),gene knock out 34
Blanc-08-01_2012_01_RN...RNAPATHS-3Arabidopsis thalianaseedlingArraysRNAPATHS--3_02/2012genotype comparaison 16
Blanc-08-01_2012_01_RN...study the role of AtNSRs proteins in the regulation of gene expression
#PubMed:25073154
Arabidopsis thalianawhole plantArraysAtNSRsgene knock out 12
BRA-INRA09-01_BIOENEnergetic Homeostasis and Sugar SignalingArabidopsis thalianawhole plantArraysabi4wt vs mutant comparison 15
BRA-INRA09-01_BIOENEnergetic Homeostasis and Sugar SignalingArabidopsis thalianawhole plantArraysCordycepintreatment variations 15
BRA-INRA09-01_BIOENEnergetic Homeostasis and Sugar SignalingArabidopsis thalianawhole plantArraysBZIP9genotype comparaison 24
BRA-INRA09-02_BIOEN_Ni...Nitrate induction - nlp mutants
#PubMed:23591880
Arabidopsis thalianawhole plantArraysNitrate induction - nlp mutantsgene knock out,time course 26
CAT-seqComparative Arabidopsis Transcriptome -Sequencing
#PubMed:27742662
Arabidopsis thalianaaerial, flower budArraysBF_vs_Forgan comparison 4
CAT-seqComparative Arabidopsis Transcriptome -SequencingArabidopsis thalianaaerial, flower budRNA-SeqRNA-Seq partorgan comparison 4
CAT-seqComparative Arabidopsis Transcriptome -SequencingArabidopsis thalianaaerialArraysCRR4_DYW1_Col0genotype comparaison 6
CEA03-01_Cadmium Dynamic of the Arabidopsis thaliana transcriptome following a cadmium exposition
#PubMed:16797112
Arabidopsis thalianaroots, rosetteArraysCadmium effect on roots and leavesdose response,time course 54
CEA03-02_Translatome-C... Analysis of the translatome of Arabidopsis in response to Cadmium stress
#PubMed:21252299
Arabidopsis thalianacell culture/primary cellArraysTranslatome-Cdtranscribed vs translated,treated vs untreated comparison 12
CEA05-01_carbonic-anhy...Comparative transcriptome analysis between carbonic anhydrase mutants and wild type ArabidopsisArabidopsis thalianarosetteArrayscarbonic anhydrase (1 or 2) simple or double mutantsgene knock out 8
CEA06-01_Uranyl_nitrat...Transcriptomic analysis of uranyl response in Arabidopsis thalianaArabidopsis thalianarosetteArraysTime course Uranyl nitrate responseorgan comparison,time course,treated vs untreated comparison 36
CEA06-02_folatedynamics of Arabidopsis transcriptome during folate depletion
#PubMed:18931140
Arabidopsis thalianacell culture/primary cellArraysmethotrexate treatmenttime course,treated vs untreated comparison 14
CEA10-01_PhosphateTranscripomics on the Arabidopsis Root tip during phosphate starvationArabidopsis thalianarootsArraysTranscripomics on the Arabidopsis Root tip during phosphate starvationtime course,treated vs untreated comparison 12
CEA10-02_LightPhotooxidative stress and light acclimation in the PSII antenna-deficient ch1 mutantArabidopsis thalianaaerialArraysPhotooxidative stress genotype comparaison,treated vs untreated comparison 24
CEA10-03_CyclocitralCharacterization of β-cyclocitral effects in Arabidopsis thaliana.
#PubMed:22431637
Arabidopsis thalianaaerialArraysAnalysis of Arabidopsis transcriptome in response to b-cyclocitral treatmenttreated vs untreated comparison 6
CEA11-02_PhosphatinPhosphatin effect on ArabidopsisArabidopsis thalianarootsArraysTranscriptomic analysis of Phosphatin effecttreated vs untreated comparison 9
CEA12-02_ChloroSapChloro-Sap
#PubMed:28220595
Arabidopsis thalianaaerialArraysComparison after 4 and 52hnormal vs transgenic comparaison,time course 18
CEA13-01_oxi1Transcriptomic analysis on the effect of oxi1 mutation under high light.
#PubMed:26747288
Arabidopsis thalianarosetteArraysoxi1 Transcriptomegenotype comparaison 8
FAPESP-BRA-INRA-10-01_...Dark hypocotyls TOR RNAiArabidopsis thalianahypocotylArraysDark hypocotyls TOR RNAinormal vs rnai mutant comparaison 6
GEN26_DroughtStress Transcriptional and translational status of genes responding to drought stress Arabidopsis thalianaaerialArraysDroughttreated vs untreated comparison 12
GEN45-Carpel_developme...Modelling the Transcriptional Network in Arabidopsis Fruit Development.Arabidopsis thalianaflowerArrayscrc1 mutantgene knock out 2
GEN45-Carpel_developme...Modelling the Transcriptional Network in Arabidopsis Fruit Development.Arabidopsis thalianaaerial, flowerArraysOverexpressorstreated vs untreated comparison 32
GnP06-01b_AgriArray New developments towards a genetic and diagnosis use of plant microarrays
#PubMed:21900481
Arabidopsis thalianaroots, rosetteArraysMultiplexage : dual-target hybridization microarray experimentgenotype and ecotype comparison 48
GnP06-01b_AgriArrayNew developments towards a genetic and diagnosis use of plant microarraysArabidopsis thalianacaulin leaf, rootsArraysNitrogen starvation time course,tissue comparison 6
GnP06-02_StarchInitiation synthesis and degradation : an integrated approach toward the understanding of starch metabolism and formation in plants.Arabidopsis thalianarosetteArraysISD-Starchgene knock out 60
GnP06-03_MicroTrAc Gene profiling of Turnip Crinkle Virus (TCV) siRNA in mutants at generation G1 and G10.Arabidopsis thalianarosetteArraysGene profiling of viral siRNA in mutants at generation G1.gene knock out,treated vs untreated comparison 8
GnP06-03_MicroTrAcGene profiling of Turnip Crinkle Virus (TCV) siRNA in mutants at generation G1 and G10.Arabidopsis thalianarosetteArraysGene profiling of Turnip Crinkle Virus (TCV) siRNA in mutants at generation G1 and G11gene knock out,treated vs untreated comparison 20
GnP06-03_MicroTrAcGene profiling of Turnip Crinkle Virus (TCV) siRNA in mutants at generation G1 and G10.Arabidopsis thalianaflowerArraysEndogenous Hairpins-IR71 targetsgene knock out 6
Gnp07_Regeneome_cuc2Gnp07_Regeneome_cuc2Arabidopsis thalianaaerialArraysCUC2tissue comparison,wt vs mutant comparison 16
Gnp07_Regeneome_embryo...somatic embryogenesisArabidopsis thalianacallusArraysembryogenesis wstissue comparison 6
Gnp07_Regeneome_embryo...somatic embryogenesisArabidopsis thalianacallusArraysembryogenesis col0tissue comparison 8
Gnp07_Regeneome_microd...Transcriptome bias induce by protocols used in microdissectionArabidopsis thalianaflowerArraysmicrodissection vs no microdissectiontreated vs untreated comparison 4
Gnp07_Regeneome_transd...transdifferentiation of Root Apical Meristem to Shoot Apical MeristemArabidopsis thalianarootsArraysmicrodissectiontime course 8
GNP07_RILKITTools to optimize the use of RIL populations, for natural diversity studies and QTL cloning
#PubMed:22453064
Arabidopsis thalianaaerialArraysRILKIT-eQTL analysis (random pair design)genotype and ecotype comparison 327
GnP10-01_GENOPEAGenopea 3.2
#PubMed:31440268
Pisum sativumcaulin leafArraysReproductive and Vegetative leavestime course,treated vs untreated comparison 30
GNP3-B4_Nitrogen_starv... Improving the nitrogen use efficiency : from model plant to crop species.
#PubMed:21900481
Arabidopsis thaliana, Brassica napusroots, rosetteArraysNitrogen starvation and re-supplytime course 22
GNP3_TRI33-ArabidoseedEstablishing the network of seed gene expression and analysis of its biodiversityArabidopsis thalianasilique and seedArraysSeed developmenttime course 4
GNP3_TRI33-ArabidoseedEstablishing the network of seed gene expression and analysis of its biodiversityArabidopsis thalianaseed, silique and seedArraysSeed specific genesorgan comparison 3
GNP3_TRI33-ArabidoseedEstablishing the network of seed gene expression and analysis of its biodiversityArabidopsis thalianaseedArraysPreliminary experiment:repetabilitygenotype and ecotype comparison 8
GNP3_TRI33-ArabidoseedEstablishing the network of seed gene expression and analysis of its biodiversityArabidopsis thalianaseedArraysEmbryo seed developmenttime course 15
GNP3_TRI33-ArabidoseedEstablishing the network of seed gene expression and analysis of its biodiversityArabidopsis thalianasilique and seedArrayseQTL analysis (random pair design)genotype and ecotype comparison 160
GnP_Blan06_TORPTENThe signalisation way TOR/PTEN in Arabidospsis.
#PubMed:22307851
Arabidopsis thalianaflowerArraysOverexpression of pten2agene knock in (transgenic) 6
GnP_Blan06_TORPTENThe signalisation way TOR/PTEN in Arabidospsis.Arabidopsis thalianaseedlingArraysRNAi Tor time coursenormal vs rnai mutant comparaison 24
GnP_Blan06_TORPTENThe signalisation way TOR/PTEN in Arabidospsis.Arabidopsis thalianaaerialArraysLST8gene knock out 8
JC2013_SYBIOPOP_2014Sybiopop: A systems biology approach to improve poplar biorefinery feedstock by deciphering the genetic architecture of lignocellulosic biomass production and quality
#PubMed:30541448, 32571208
Populus nigracambium,xylemRNA-SeqLarge genotype and population comparisons in Populus nigragenotype and ecotype comparison 459
JC2013_SYBIOPOP_2014Sybiopop: A systems biology approach to improve poplar biorefinery feedstock by deciphering the genetic architecture of lignocellulosic biomass production and qualityPopulus nigracambium,xylemRNA-SeqValidation of pilot transcriptomic studygenotype and ecotype comparison 24
JC2013_SYBIOPOP_2014Sybiopop: A systems biology approach to improve poplar biorefinery feedstock by deciphering the genetic architecture of lignocellulosic biomass production and qualityPopulus nigracambium,xylemRNA-SeqPilot transcriptomic studygenotype and ecotype comparison 24
NGS2012_02_MicroDDilutionArabidopsis thalianaseedRNA-SeqNGS micro D-2null 6
NGS2013_04_NodTranscriptomic response to Nod Factor treatments on MedicagoMedicago truncatularootsRNA-SeqTranscriptomic analysis of Medicago root hairs treated vs untreated comparison 6
NGS2013_07_PcapsiciFFECAPS project: Phytophthora capsici Illumina RNAseq transcriptome of two isolates, one adapted to pepper, another non adapted, in two pepper accessions, one partially resistant and one susceptible to Phytophthora capsiciCapsicum annuum L.stemRNA-SeqEFFECAPS-Phytophthora capsicigenotype comparison,treated vs untreated comparison 24
NGS2014_01_MicroDNone
#PubMed:29434651
Arabidopsis thalianaseedRNA-SeqNGS micro D-1organ comparison 8
NGS2014_07_HeveaRNAseq analysis of latex samples from healthy and Tapping Panel Dryness-affected trees.
#PubMed:29855601
Hevea brasiliensislatexRNA-SeqHevea_TPD-seqgenotype comparaison,normal vs disease comparison 21
NGS2014_10_EpsilonTranscriptomic changes associated with DNA pol epsilon deficiency
#PubMed:27193996
Arabidopsis thalianaseedlingRNA-SeqTranscriptome deficient mutants for the epsilon DNA polymerasenormal vs transgenic comparaison 12
NGS2014_21_SeedComSeedcom
#PubMed:32086366
Zea maysaleurone, embryo, embryo surrounding region, endosperm, pericarp, scutellumRNA-SeqRNA-seq Seedcomorgan comparison 24
NGS2014_39_LeafNet2Dynamic and specificity of CUP-SHAPED COTYLEDON transcription factors during leaf development
#PubMed:35575098
Arabidopsis thalianaseedlingRNA-SeqCUC2-identificationtreated vs untreated comparison 6
NGS2015_01_TransitionTranscriptome of floral transition
#PubMed:30971226
Arabidopsis thalianarosetteRNA-SeqTransitiontime course 12
NGS2015_05_HIGH_TEMPER...High temperature Arabidopsis root transcriptome
#PubMed:28827608
Arabidopsis thalianarootsRNA-SeqHigh Temp WT treated vs untreated comparison 7
NGS2015_12_ZeaWall2ZeaWall2
#PubMed:31891625
Zea maysinternodeRNA-SeqZeaWall2allele,genomic comparison 10
NGS2015_19_ANR-JC-BRAV...Brachypodium Vascular ontogeny
#PubMed:33892630
Brachypodium distachyonmeristemRNA-SeqMicrodissection data of 3 vascular bundles stagestime course,tissue differentiation 12
NGS2016-07-ASCOncRNASplicing regulation by the lncRNA ASCO
#PubMed:32285620
Arabidopsis thalianaseedlingRNA-SeqSplicing regulation by the lncRNA ASCO normal vs rnai mutant comparaison,normal vs transgenic comparaison 9
NGS2016_08_DYW2DYW2_OTP100
#PubMed:28760958
Arabidopsis thalianaflower bud,rosette,stemRNA-SeqDYW2gene knock out 12
NGS2016_10_DormancyDormancy Release by phosphorylation
#PubMed:31325184
Arabidopsis thalianaseedRNA-SeqRNA seq on mpk8 and tcp14 mutants on dry and imbibited seedsgene knock out 18
NGS2017_08_BrasiliceEffect of silicon (Si) supply on lef and root transcriptomes
#PubMed:30820649
Brassica napusaerial, rootsRNA-SeqTransilicetreated vs untreated comparison 12
NGS2017_09_MOSS1The goal of this study is to identify genes whose expression is affected by decapitation and auxin in moss gametophores
#PubMed:35841890
Physcomitrella patensstemRNA-SeqAUXIN_DECAPITUATION_2exptreated vs untreated comparison 24
NGS2017_11_ROSEX2Project 1 : VeRo : Vernalisation Rose (Genetic and epigenetic control of flowering in Rosa Wichuraiana) Project 2 : Sucre-Auxine_Rose
#PubMed:33543244
Rosa chinensisflower budRNA-SeqCold Responsedose response,time course 6
NGS2017_11_ROSEX2Project 1 : VeRo : Vernalisation Rose (Genetic and epigenetic control of flowering in Rosa Wichuraiana) Project 2 : Sucre-Auxine_RoseRosa hybrida flower budRNA-SeqAuxin sugar antagonist effect on budburst treated vs untreated comparison 12
NGS2017_12_DDM1Hypomethylation and drought stress on transcriptome
#PubMed:34128549
Populus tremula x Populus albashoot apexRNA-SeqNGS2017_12_DDM1normal vs rnai mutant comparaison 6
NGS2018_05_TORAnalysis of Arabidopsis mutants TOR/LST8/MAKTOR
#PubMed:31216485
Arabidopsis thalianawhole plantRNA-SeqAnalysis of Arabidopsis mutants TOR/LST8/YAK1/MAKTORgene knock out 18
NGS2018_10_EthyleneRNA-seq ± Ethylene
#PubMed:33020928
Arabidopsis thalianaseedRNA-Seqeffect of ethylene RNA-seqtreated vs untreated comparison 21
NGS2018_11_nlp2Study of the primary nitrate response (PNR) in nlp2 mutant and WT
#PubMed:36752317
Arabidopsis thalianaseedlingRNA-SeqNo treatment / Nitrate starvation / Nitrate inductionnormal vs mutant comparison,treated vs untreated comparison 18
NGS2019_18_EplusEplus
#PubMed:32098170
Arabidopsis thalianaleafRNA-SeqEplusgene knock out 12
NGS2020_14_pi4kb1b2Study of pi4kb1b2 mutantArabidopsis thalianaleaf, rootsRNA-SeqDifferential gene expression in seedlings of pi4kb1b2gene knock out,organ comparison 12
NGS2020_19_ARIMNetBarley Stress ToleranceHordeum vulgareaerialRNA-SeqBarley responses to nitrate limitationdose response,genotype comparison 18
NGS2020_20_IDEASIDEAS project on nitrogen starvation
#PubMed:37954572
Arabidopsis thalianarosetteRNA-SeqIDEAStreated vs untreated comparison 20
NGS2020_24_ERAProtein farnesylation is involved in the adaptation of Arabidopsis to nitrogen starvationArabidopsis thalianarosetteRNA-SeqNitrogendose response,genotype and ecotype comparison 18
NGS2021_03_Snap33Description of Arabidopsis thaliana t-SNARE SNAP33
#PubMed:38281242
Arabidopsis thalianaseedling,whole plantRNA-SeqRNA-seq snap33-1 vs WT gene knock out,genotype comparison,time course 12
NGS2021_04_MACTranscriptome analysis of mutants in uncharacterised mitochondrial proteins
#PubMed:37651534
Arabidopsis thalianaseedlingRNA-SeqmTRANgene knock out 6
NO27_Iron_signaling Transcriptomic response to iron signalingArabidopsis thalianacell culture/primary cellArraysIron responsetime course 7
PC_ARCOLENitrogenous nutrition efficiency of canola in spring : identification of targets for plant breedingArabidopsis thalianaaerialArraysARCOLE / PGPRdose response,organ comparison,treated vs untreated comparison 12
PC_GeBPGPL_transcripto...GeBP/GPL quadruple mutant and GPL2:VP16 transcriptomicArabidopsis thalianawhole plantArraysGrowth on MS of quadruple and GPL2:VP16gene knock in (transgenic),gene knock out 12
RA03-02_Potyvirus Transcriptional analysis of Arabidopsis thaliana infected by a potyvirus.Arabidopsis thalianarosetteArraysPotyvirusnormal vs disease comparison 4
RA03-03_ProtoplastFrom protoplast to plant : transcriptome profiling from cell division to differentiation in Arabidopsis thalianaArabidopsis thalianaaerial, cell culture/primary cell, protoplast, seedlingArraystranscriptome profiling from a protoplast culture of arabidopsis thalianatime course 15
RA03-04_Elongation_iso...Transcriptome analysis of the hypocotyl growth switch
#PubMed:20819179
Arabidopsis thalianahypocotylArraysIsoxaben treatmenttreated vs untreated comparison 4
RA03-04_Elongation_iso...Transcriptome analysis of the hypocotyl growth switchArabidopsis thalianawhole plantArraysplant germinationtime course 3
RA03-04_Elongation_iso...Transcriptome analysis of the hypocotyl growth switchArabidopsis thalianahypocotylArraysTime coursetime course 4
RA03-05_Clubroot Deciphering the Arabidopsis mechanisms of resistance to clubroot (Plasmodiophora brassicae) by differential analysis of transcriptome.
#PubMed:23420032
Arabidopsis thalianawhole plantArraysClub root responsenormal vs disease comparison,time course 12
RA03-05_ClubrootDeciphering the Arabidopsis mechanisms of resistance to clubroot (Plasmodiophora brassicae) by differential analysis of transcriptome.Arabidopsis thalianaroots, whole plantArraysClubroot CATMA-2organ comparison 8
RA03-06_Seed_endotheli...Transcriptome analysis of the tannin-producing cells in ArabidopsisArabidopsis thalianaseedArraysEndotheliumgene knock out 17
RA03-07_TOR Transcriptome analysis of TOR (Target of Rapamycin) mutant.Arabidopsis thalianarootsArraysTOR_RNAiwt vs mutant comparison 8
RA03-07_TORTranscriptome analysis of TOR (Target of Rapamycin) mutant.Arabidopsis thalianarootsArraysTORtreated vs untreated comparison,wt vs mutant comparison 29
RA04-01_msilIdentification of genes induced by fertilizationArabidopsis thalianasilique and seedArraysmsilwt vs mutant comparison 4
RA04-02_AGOTranscriptome of the argonaute (ago) mutantArabidopsis thalianahypocotylArraysAGOgene knock out 16
RA04-03_Nin7atnin7-1 (atnlp7) in two different nitrogen conditions.
#PubMed:18826430
Arabidopsis thalianaroots, rosetteArraysNin7gene knock out 14
RA04-04_NRT2.4NRT2.4 NO3 transport mutant.Arabidopsis thalianaroots, rosetteArraysNRT2.4gene knock out 4
RA04-05_NO3-seed-dorma...Nitrate control of Arabidopsis seed dormancy
#PubMed:19074630
Arabidopsis thalianaseedArraysdry seedstreated vs untreated comparison 6
RA04-05_NO3-seed-dorma...Nitrate control of Arabidopsis seed dormancyArabidopsis thalianaseedArrayssoaked seedstreated vs untreated comparison 9
RA04-05_NO3-seed-dorma...Nitrate control of Arabidopsis seed dormancyArabidopsis thalianaseedArrayssiliquestreated vs untreated comparison 3
RA04-06_PIIStudy of PII mutant, a sensor of carbon and/or nitrogen status protein
#PubMed:16545809
Arabidopsis thalianaaerialArrays1mM NO3wt vs mutant comparison 4
RA04-06_PIIStudy of PII mutant, a sensor of carbon and/or nitrogen status proteinArabidopsis thalianaaerialArraysNH4wt vs mutant comparison 8
RA04-06_PIIStudy of PII mutant, a sensor of carbon and/or nitrogen status proteinArabidopsis thalianaaerialArrays0-nitrogenwt vs mutant comparison 4
RA04-07_PGPR Arabidopsis thaliana transcriptome analysis in response to plant growth promoting rhizobacteria (PGPR).
#PubMed:18184068
Arabidopsis thalianaroots, rosetteArraysProfiling of the root architecture response to Phyllobacteriumtreated vs untreated comparison 4
RA04-07_PGPRArabidopsis thaliana transcriptome analysis in response to plant growth promoting rhizobacteria (PGPR).Arabidopsis thalianarosetteArraysTrancriptional response to 3 rhizobacteriatreated vs untreated comparison 4
RA04-07_PGPRArabidopsis thaliana transcriptome analysis in response to plant growth promoting rhizobacteria (PGPR).Arabidopsis thalianarosetteArraysProfiling of the PGPR induced systemic resistance (ISR)normal vs rnai mutant comparaison,treated vs untreated comparison 4
RA04-08_SenescenceTranscriptomic analysis of leaf senescence in Arabidopsis thaliana.
#PubMed:17098848
Arabidopsis thalianarosetteArraysIsogenic linesnear isogenic lines (hif) 2
RA04-08_SenescenceTranscriptomic analysis of leaf senescence in Arabidopsis thaliana. Arabidopsis thalianarosetteArraysSugars and leaf senescencetreated vs untreated comparison 12
RA05-01_EthyleneStudy of the ethylene respons in plants.Cellular elongation in the root and ethylene.
#PubMed:23134674
Arabidopsis thalianarootsArraysACC-treated root vs. control roottreated vs untreated comparison 6
RA05-02_Erwinia Regulation of the Arabidopsis transcriptome by the type three secretion system (TTSS) of Erwinia amylovora
#PubMed:22316300
Arabidopsis thalianarosetteArraysErwinianormal vs disease comparison 12
RA05-03_SGSTranscriptome analysis of two mutants rdr6/sgs2 and sgs3 impaired in post-transcriptional gene silencing (PTGS)Arabidopsis thalianaflower, rosetteArraysSGS2_and_3gene knock in (transgenic) 20
RA05-04_MeiocytesTranscriptomic of meiocytes.
#PubMed:21815983
Arabidopsis thalianarosette, stamenArraysMeiocytestotal transcriptome knowledge 2
RA05-04_MeiocytesTranscriptomic of meiocytes.Arabidopsis thalianameiocyte, roots, rosette, stamenArraysMeiocyte transcriptomeorgan comparison 12
RA05-05_Procuste Identification of genes involved in cell wall integrity signalling in Arabidopsis dark-grown hypocotyls
#PubMed:17540573
Arabidopsis thalianawhole plantArraysTranscriptome Analysis of prc1 or the1 and prc1_the1gene knock out 8
RA05-06_LIFLIF: Comparisons of transcritomic profils betweeen related mutants.
#PubMed:21304947
Arabidopsis thalianaaerialArraysLIFgene knock in (transgenic),organ comparison 32
RA05-07_Stifenia Effects of Stifenia pretreatment on Arabidopsis thaliana resistance against Fusarium oxysporum pv rafaniArabidopsis thalianarosetteArraysStifeniatreated vs untreated comparison 8
RA05-08_SeaweedSeaweed extract impact on plant growth and nitrogen metabolism. Arabidopsis thalianaroots, rosetteArraysSeaweed extract and hydroponically grown Arabidopsis plantstreated vs untreated comparison 12
RA05-09_Urea Urea impact on the nitrogen metabolism of plant and on the nitrogen transport systems
#PubMed:18508958
Arabidopsis thalianaroots, rosetteArraysUreatreated vs untreated comparison 12
RA05-10_NRT2.7atnrt2.7 v and atnrt2.7 s in a low and high nitrogen regime.Arabidopsis thalianaaerial, rootsArraysatnrt2.7gene knock out 16
RA05-11_CMSRapeseedComparing nuclear gene expression in two CMS-systems using microarray technologyBrassica napusflowerArraysRfPPRwt vs mutant comparison 6
RA05-11_CMSRapeseedComparing nuclear gene expression in two CMS-systems using microarray technologyBrassica napusflowerArraysCMS4:19 and At Chr3wt vs mutant comparison 16
RA05-12_NAR2Atnar2.1-1 response to transfer on low nitrate conditionArabidopsis thalianaaerial, rootsArraysatnar2.1-1dose response,gene knock out 16
RA06-02_StayGreen Eskimo gene characterisation.
#PubMed:19061521
Arabidopsis thalianarosetteArraysDrought and salt stress responsegene knock out,treated vs untreated comparison 14
RA06-03_DspA-Erwinia Regulation of the Arabidopsis transcriptome by the type three effector DspA/E of Erwinia amylovora.Arabidopsis thalianarosetteArraysDspA/E of Erwinia amylovorawt vs mutant comparison 10
RA06-04_BOS1 BOS1 signaling pathway in Arabidopsis thaliana / Erwinia chrysanthemi interactionArabidopsis thalianaaerialArraysErwinia chrysanthemi treatmentsnormal vs disease comparison 21
RA06-05_Potyvirus-Ecot... Transcriptionnal response to potyviruses infection in ArabidopsisArabidopsis thalianarosetteArraysPotyvirus effectnormal vs disease comparison 10
RA06-05_Potyvirus-Ecot...Transcriptionnal response to potyviruses infection in ArabidopsisArabidopsis thalianarosetteArraysArabidopsis ecotypesnormal vs disease comparison 12
RA07-01_PRX34Modifications of transcriptome in primary floral stem of Arabidopsis thaliana deregulated for a peroxydase involved in the lignification.Arabidopsis thalianastemArraysPrimary Floral Stem 20cmnormal vs transgenic comparaison 6
RA07-01_PRX34Modifications of transcriptome in primary floral stem of Arabidopsis thaliana deregulated for a peroxydase involved in the lignification.Arabidopsis thalianastemArraysPrimary Floral Stem 40cmnormal vs transgenic comparaison 3
RA07-02_ABA2Analysis of the role of maternal and embryonic ABA in seeds.Arabidopsis thalianaseedArraysMaternal/embryonic ABA-1gene knock out,treated vs untreated comparison 8
RA07-03_ABA4Analyse of arabidopsis mutants and transforming affected in the synthesis of abscissic acid.Arabidopsis thalianaaerialArraysABA4/1gene knock in (transgenic),gene knock out 8
RA07-05_MYB82Fonctionnal caracterization of the transcription factor VvMYB82Arabidopsis thalianaflowerArraysfonctional caracterization of VvMYB82wt vs mutant comparison 4
RA08-01_CPL1Transcriptome analysis of fry2 mutants.Arabidopsis thalianawhole plantArraysTranscriptome analysis of fry2 mutantsgene knock out 8
RA08-02_Clavata-Ralsto...Studies of two mutants for clavata genesArabidopsis thalianawhole plantArraysClavata-Ralstoniawt vs mutant comparison 12
RA08-03_KimDifferential expression in laccase mutants of Arabidopsis thalianaArabidopsis thalianastemArraysLaccaseswt vs mutant comparison 11
RA09-01_QTLleafgrowthStudying the transcriptional consequences of a QTL for shoot growth (SG3, SG1). Studying the transcriptional consequences of a QTL for shoot growth under mannitol condition (EGO3).
#PubMed:24479634
Arabidopsis thalianaaerialArraysEGO3genotype comparaison 4
RA09-01_QTLleafgrowthStudying the transcriptional consequences of a QTL for shoot growth (SG3, SG1). Studying the transcriptional consequences of a QTL for shoot growth under mannitol condition (EGO3). Arabidopsis thalianaaerialArraysSG1-SG3genotype comparaison 8
RA09-02_TCTPTranscriptomic analyses approach to identify genes associated with organ growth downstream TCTP in ArabidopsisArabidopsis thalianarosetteArraysOver Expressiongene knock in (transgenic) 4
RA09-02_TCTPTranscriptomic analyses approach to identify genes associated with organ growth downstream TCTP in ArabidopsisArabidopsis thalianarosetteArraysknockoutgene knock out 4
RA09-02_TCTPTranscriptomic analyses approach to identify genes associated with organ growth downstream TCTP in ArabidopsisArabidopsis thalianarosetteArraysRNAinormal vs rnai mutant comparaison 4
RA09-03_SGSTranscriptome analysis of mutants impaired in post-transcriptional gene silencing (PTGS).Arabidopsis thalianaaerialArraysmutants versus wtgene knock in (transgenic) 16
RA10-01_LaccasesDifferential expression in laccase mutants of Arabidopsis thaliana
#PubMed:21447792
Arabidopsis thalianastemArraysLaccase mutationsnormal vs knock out comparison 12
RA10-02_ViromouvAnalysis of the genic expression modifications of Arabidopsis Companion cells infected by plants virusesArabidopsis thalianaprotoplast,rosetteArraysViromouvnormal vs disease comparison 12
RA10-03_EliciteurEffect of oligosaccharide treatments on gene expression.Arabidopsis thalianarosetteArraysOligosaccharide treatment - 24 hpttreated vs untreated comparison 36
RA10-04_RootsRoot molecular responses of nitrate transporter mutantsArabidopsis thalianarootsArraysWS vs Clca2/35A2/352.7gene knock out,genotype comparaison,normal vs transgenic comparaison 16
RA11-01_prghTranscriptomic analysis of Arabidopsis genes after treatment with Salmonella 14028s and Salmonella type three secretion system (T3SS) mutant prgh
#PubMed:24198231
Arabidopsis thalianawhole plantArrayscomparison between Salmonella Wild type 14028s and Salmonella mutant prgh in Arabidopsis infection.time course,treated vs untreated comparison 30
RA11-04_QTLFunctional characterization of Shoot Growth 1 (Sg1)Arabidopsis thalianawhole plantArraysStudy of the transcriptional consequences of a growth QTL candidate (Sg1)gene knock out 6
RA12-01_mut_flgFLG-OoPTIMICEArabidopsis thalianarosetteArraysINRA12-01_mut-flggene knock in (transgenic) 30
RA12-03_Raptor-NaClResponse to salt stress of Raptor mutantsArabidopsis thalianawhole plantArraysResponse to salt stress of Raptor mutantsgene knock out,treated vs untreated comparison 6
RA12-05_mut_flg_IIFLG-MPKs
#PubMed:24980080
Arabidopsis thalianawhole plantArraysINRA12-05_mut_flg_IIgene knock out,normal vs mutant comparison,treated vs untreated comparison 24
RA12-06_myb118Identification of genes misregulated in developing seeds of Arabidopsis in response to the myb118 mutation.
#PubMed:25194028
Arabidopsis thalianaseedArraysmyb118 mutationnormal vs transgenic comparaison 8
RA14-02_mkk3-ABAMKK3-ABAArabidopsis thalianaseedlingArraysIdentification of the miss-regulated genes in mkk3 under ABA treatment.gene knock out,treated vs untreated comparison 12
RA14-04_ncedABA signaling in Arabidopsis seeds
#PubMed:30948555
Arabidopsis thalianaseedArraysABAseedgene knock out,genomic comparison 9
RA14-05_MultipassMULTIPASS
#PubMed:30373239
Arabidopsis thalianaaerial,rosetteArraysEffect of N nutrition of Arabidopsis response to Erwinia infectionnormal vs disease comparison,treated vs untreated comparison 8
RA15-01_MYB92Identification of genes misregulated in developing seeds of Arabidopsis in response to the myb92 mutation and to MYB92 overexpression.Arabidopsis thalianaseedArraysIdentification of genes misregulated to myb92 mutant and MYB92 OE.gene knock in (transgenic),gene knock out,normal vs transgenic comparaison 6
RA15-03_OXPMT7-7Impact of Brachypodium acyl-transferases.Arabidopsis thalianastemArraysAcyltransferase Brachypodium-Arabidopsisnormal vs transgenic comparaison 6
RA15-04_ELIM1Identification of genes differentiallty expressed in mur1 basal stems
#PubMed:28961242
Arabidopsis thalianastemArraystranscription of ectopic lignificationgenotype comparaison 6
RA15-06_OXMYC4AtMYC4 overexpression in Arabidopsis (ws)Arabidopsis thalianastemArraysAtMYC4 overexpression in Arabidopsis (ws)normal vs transgenic comparaison 6
RA15-07_BurxCol_465RA15-07_BurxCol_465Arabidopsis thalianacaulin leafArraysBurxCol-465gene knock out 4
RA16-01_MKK3_woundingIdentification of MKK3-dependent wonding-induced genesArabidopsis thalianaaerialArraysIdentification of MKK3-dependent wonding-induced genesgene knock out,genotype comparaison,normal vs transgenic comparaison,treated vs untreated comparison 12
RA16-03_ROTENONEEffect of the inhibition of the mitochondrial respiratory chain complex I (CI) on shoot initiation on protoplast-derived calliArabidopsis thalianacell culture/primary cellArraysRotenone_Complex I mutantsgene knock out,genotype and ecotype comparison,time course 12
RA16-03_ROTENONEEffect of the inhibition of the mitochondrial respiratory chain complex I (CI) on shoot initiation on protoplast-derived calliArabidopsis thalianacallusArraysRotenonetime course,treated vs untreated comparison 18
RA16-04_3WD40Gene disruption in a triple WD40 mutant.Arabidopsis thalianastemArraysStem transcriptome in a triple WD40 mutant.genotype comparaison 4
RS03-01_Onc6bTranscriptome alterations by the 6b oncogene of AgrobacteriumArabidopsis thalianarosetteArraysDex-GVGgene knock in (transgenic) 2
RS03-01_Onc6bTranscriptome alterations by the 6b oncogene of AgrobacteriumArabidopsis thalianarosetteArraysOncogene_effectgene knock in (transgenic) 6
RS03-02_Phospholipases Identification of genes induced with the cold via the ways of indication of the phospholipases C and D.
#PubMed:16258011
Arabidopsis thalianacell culture/primary cellArraysPhospholipases 22°Ctreated vs untreated comparison 15
RS03-02_PhospholipasesIdentification of genes induced with the cold via the ways of indication of the phospholipases C and D. Arabidopsis thalianacell culture/primary cellArraysPhospholipases 4°Ctreated vs untreated comparison 18
RS04-01_CytCThe cytochrome pathway and cytochrome C biogenesisArabidopsis thalianacell culture/primary cellArraysAntimycine Atreated vs untreated comparison 5
RS04-01_CytCThe cytochrome pathway and cytochrome C biogenesisArabidopsis thalianarosetteArraysCCMEgene knock in (transgenic) 5
RS04-02_NTRTranscriptomic study of a thioredoxin reductase knock-out mutant.
#PubMed:19825611
Arabidopsis thalianawhole plantArraysNTRgene knock out,wt vs mutant comparison 6
RS04-04_SKP2_CUL4Functional analysis of the SKP2 and CUL4 proteinsArabidopsis thalianacotyledonsArrayscomparison_Col0vsSKP2wt vs mutant comparison 6
RS04-04_SKP2_CUL4Functional analysis of the SKP2 and CUL4 proteinsArabidopsis thalianawhole plantArrayscomparison_Cul4_As_lightgene knock out,normal vs antisens mutant comparison 9
RS04-04_SKP2_CUL4Functional analysis of the SKP2 and CUL4 proteinsArabidopsis thalianawhole plantArrayscomparison_Cul4_As_dark_lightgene knock out,normal vs antisens mutant comparison 12
RS04-05_Nickel Effect of nicotianamine over-accumulation in standard condition and in response to nickel treatmentArabidopsis thalianarootsArraysNickel_Rootgene knock in (transgenic) 4
RS04-05_NickelEffect of nicotianamine over-accumulation in standard condition and in response to nickel treatmentArabidopsis thalianaaerialArraysNickel_Leafgene knock in (transgenic),organ comparison 2
RS04-06_CDT1Characterization of the AtCDT1a and AtCDT1b by RNAiArabidopsis thalianaaerialArraysCDT1normal vs rnai mutant comparaison 4
RS04-07_Set-1Functional analysis of protein SET in Arabidopsis
#PubMed:17122067
Arabidopsis thalianawhole plantArraysComparison WT-set mutants normal vs rnai mutant comparaison 8
RS04-08_NtKisCKI role in plant development Arabidopsis thalianawhole plantArraysNt-Kisgene knock in (transgenic) 4
RS04-09_hahb4 Identification of targets of the transcription factor hahb-4 in relation to abiotic stress
#PubMed:16972869
Arabidopsis thalianaaerialArraysWater stressgene knock in (transgenic),treated vs untreated comparison 8
RS04-10_Oxydative--str... Involvement of small non coding RNAs in Arabidopsis responses to oxidative stress Arabidopsis thalianacell culture/primary cellArraystime course H2O2 traitementtreated vs untreated comparison 8
RS05-04_salicylic-acidRole of phosphatidylinositol 4-kinase
#PubMed:17496105
Arabidopsis thalianacell culture/primary cellArraysModification of response to salicylic acid by wortmannin treatmentdose response,treated vs untreated comparison 42
RS05-05_Atrazine Sucrose effects on xenobiotic tolerance in Arabidopsis thaliana, a CATMA study. Transcriptomic analysis of sucrose effects on xenobiotic tolerance in Arabidopsis thaliana.
#PubMed:18053238
Arabidopsis thalianawhole plantArraysEffect of atrazine and sucrose on Arabidopsis transcriptometreated vs untreated comparison 12